Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sctC and sctW are separated by 6 nucleotides sctW and LU632_RS00460 are separated by 30 nucleotides
LU632_RS00450: sctC - type III secretion system outer membrane ring subunit SctC, at 92,021 to 93,793
sctC
LU632_RS00455: sctW - type III secretion system gatekeeper subunit SctW, at 93,800 to 94,921
sctW
LU632_RS00460: LU632_RS00460 - EscV/YscV/HrcV family type III secretion system export apparatus protein, at 94,952 to 97,006
_RS00460
Position (kb) 93
94
95 Strain fitness (log2 ratio) -2
-1
0
1
2 at 92.822 kb on + strand, within sctC at 92.905 kb on + strand, within sctC at 93.031 kb on + strand, within sctC at 93.033 kb on + strand, within sctC at 93.033 kb on + strand, within sctC at 93.033 kb on + strand, within sctC at 93.034 kb on - strand, within sctC at 93.034 kb on - strand, within sctC at 93.034 kb on - strand, within sctC at 93.037 kb on + strand, within sctC at 93.037 kb on + strand, within sctC at 93.037 kb on + strand, within sctC at 93.037 kb on + strand, within sctC at 93.037 kb on + strand, within sctC at 93.038 kb on - strand, within sctC at 93.038 kb on - strand, within sctC at 93.039 kb on + strand, within sctC at 93.039 kb on + strand, within sctC at 93.040 kb on - strand, within sctC at 93.040 kb on - strand, within sctC at 93.040 kb on - strand, within sctC at 93.059 kb on - strand, within sctC at 93.217 kb on - strand, within sctC at 93.217 kb on - strand, within sctC at 93.221 kb on - strand, within sctC at 93.253 kb on + strand, within sctC at 93.253 kb on + strand, within sctC at 93.254 kb on - strand, within sctC at 93.254 kb on - strand, within sctC at 93.256 kb on + strand, within sctC at 93.256 kb on + strand, within sctC at 93.271 kb on + strand, within sctC at 93.271 kb on + strand, within sctC at 93.271 kb on + strand, within sctC at 93.272 kb on - strand, within sctC at 93.314 kb on + strand, within sctC at 93.315 kb on - strand, within sctC at 93.315 kb on - strand, within sctC at 93.315 kb on - strand, within sctC at 93.436 kb on + strand, within sctC at 93.454 kb on + strand, within sctC at 93.515 kb on + strand, within sctC at 93.532 kb on + strand, within sctC at 93.599 kb on - strand, within sctC at 93.599 kb on - strand, within sctC at 93.599 kb on - strand, within sctC at 93.599 kb on - strand, within sctC at 93.602 kb on + strand, within sctC at 93.603 kb on - strand, within sctC at 93.603 kb on - strand, within sctC at 93.603 kb on - strand, within sctC at 93.655 kb on - strand at 93.731 kb on - strand at 93.806 kb on - strand at 94.009 kb on + strand, within sctW at 94.397 kb on - strand, within sctW at 94.472 kb on - strand, within sctW at 95.191 kb on + strand, within LU632_RS00460 at 95.342 kb on - strand, within LU632_RS00460 at 95.499 kb on - strand, within LU632_RS00460 at 95.508 kb on + strand, within LU632_RS00460 at 95.508 kb on + strand, within LU632_RS00460 at 95.508 kb on + strand, within LU632_RS00460 at 95.551 kb on + strand, within LU632_RS00460 at 95.560 kb on + strand, within LU632_RS00460 at 95.635 kb on + strand, within LU632_RS00460 at 95.640 kb on - strand, within LU632_RS00460 at 95.640 kb on - strand, within LU632_RS00460 at 95.641 kb on + strand, within LU632_RS00460 at 95.642 kb on - strand, within LU632_RS00460 at 95.642 kb on - strand, within LU632_RS00460 at 95.655 kb on + strand, within LU632_RS00460 at 95.655 kb on + strand, within LU632_RS00460 at 95.680 kb on - strand, within LU632_RS00460 at 95.734 kb on + strand, within LU632_RS00460
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 92,822 + sctC LU632_RS00450 0.45 +0.4 92,905 + sctC LU632_RS00450 0.50 -0.0 93,031 + sctC LU632_RS00450 0.57 +0.4 93,033 + sctC LU632_RS00450 0.57 +0.7 93,033 + sctC LU632_RS00450 0.57 -0.3 93,033 + sctC LU632_RS00450 0.57 +0.6 93,034 - sctC LU632_RS00450 0.57 +0.4 93,034 - sctC LU632_RS00450 0.57 +0.2 93,034 - sctC LU632_RS00450 0.57 +0.1 93,037 + sctC LU632_RS00450 0.57 +0.3 93,037 + sctC LU632_RS00450 0.57 -0.4 93,037 + sctC LU632_RS00450 0.57 -1.8 93,037 + sctC LU632_RS00450 0.57 +0.5 93,037 + sctC LU632_RS00450 0.57 +0.2 93,038 - sctC LU632_RS00450 0.57 +0.2 93,038 - sctC LU632_RS00450 0.57 -0.3 93,039 + sctC LU632_RS00450 0.57 +0.3 93,039 + sctC LU632_RS00450 0.57 +0.3 93,040 - sctC LU632_RS00450 0.57 +0.4 93,040 - sctC LU632_RS00450 0.57 +0.2 93,040 - sctC LU632_RS00450 0.57 +0.3 93,059 - sctC LU632_RS00450 0.59 +0.7 93,217 - sctC LU632_RS00450 0.67 +0.4 93,217 - sctC LU632_RS00450 0.67 +0.5 93,221 - sctC LU632_RS00450 0.68 +0.1 93,253 + sctC LU632_RS00450 0.69 +0.2 93,253 + sctC LU632_RS00450 0.69 +0.3 93,254 - sctC LU632_RS00450 0.70 +0.7 93,254 - sctC LU632_RS00450 0.70 +0.5 93,256 + sctC LU632_RS00450 0.70 -0.2 93,256 + sctC LU632_RS00450 0.70 -0.6 93,271 + sctC LU632_RS00450 0.71 +0.1 93,271 + sctC LU632_RS00450 0.71 +0.3 93,271 + sctC LU632_RS00450 0.71 +0.3 93,272 - sctC LU632_RS00450 0.71 -0.1 93,314 + sctC LU632_RS00450 0.73 +0.4 93,315 - sctC LU632_RS00450 0.73 +0.3 93,315 - sctC LU632_RS00450 0.73 +0.2 93,315 - sctC LU632_RS00450 0.73 +1.0 93,436 + sctC LU632_RS00450 0.80 -0.6 93,454 + sctC LU632_RS00450 0.81 +0.3 93,515 + sctC LU632_RS00450 0.84 -0.7 93,532 + sctC LU632_RS00450 0.85 -0.4 93,599 - sctC LU632_RS00450 0.89 -0.4 93,599 - sctC LU632_RS00450 0.89 -0.2 93,599 - sctC LU632_RS00450 0.89 +0.3 93,599 - sctC LU632_RS00450 0.89 +0.1 93,602 + sctC LU632_RS00450 0.89 +0.5 93,603 - sctC LU632_RS00450 0.89 +1.0 93,603 - sctC LU632_RS00450 0.89 +0.4 93,603 - sctC LU632_RS00450 0.89 +0.8 93,655 - -0.1 93,731 - -0.1 93,806 - +0.2 94,009 + sctW LU632_RS00455 0.19 +0.4 94,397 - sctW LU632_RS00455 0.53 +0.1 94,472 - sctW LU632_RS00455 0.60 +1.2 95,191 + LU632_RS00460 0.12 +0.6 95,342 - LU632_RS00460 0.19 +0.7 95,499 - LU632_RS00460 0.27 +0.5 95,508 + LU632_RS00460 0.27 +0.6 95,508 + LU632_RS00460 0.27 +0.8 95,508 + LU632_RS00460 0.27 +0.1 95,551 + LU632_RS00460 0.29 +0.5 95,560 + LU632_RS00460 0.30 +0.9 95,635 + LU632_RS00460 0.33 +0.0 95,640 - LU632_RS00460 0.33 -0.0 95,640 - LU632_RS00460 0.33 +2.2 95,641 + LU632_RS00460 0.34 +0.5 95,642 - LU632_RS00460 0.34 +0.1 95,642 - LU632_RS00460 0.34 +2.4 95,655 + LU632_RS00460 0.34 +0.0 95,655 + LU632_RS00460 0.34 +0.3 95,680 - LU632_RS00460 0.35 -0.4 95,734 + LU632_RS00460 0.38 +0.5
Or see this region's nucleotide sequence