Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dppC and dppD are separated by 9 nucleotides dppD and LU632_RS00285 overlap by 29 nucleotides LU632_RS00285 and LU632_RS00290 are separated by 144 nucleotides
LU632_RS00275: dppC - dipeptide ABC transporter permease DppC, at 55,558 to 56,460
dppC
LU632_RS00280: dppD - dipeptide ABC transporter ATP-binding protein, at 56,470 to 57,456
dppD
LU632_RS00285: LU632_RS00285 - ABC transporter ATP-binding protein, at 57,428 to 58,447
_RS00285
LU632_RS00290: LU632_RS00290 - hypothetical protein, at 58,592 to 59,620
_RS00290
Position (kb) 57
58
59 Strain fitness (log2 ratio) -1
0
1 at 56.480 kb on + strand at 56.551 kb on + strand at 56.638 kb on - strand, within dppD at 56.645 kb on - strand, within dppD at 56.653 kb on - strand, within dppD at 56.786 kb on - strand, within dppD at 57.046 kb on - strand, within dppD at 57.046 kb on - strand, within dppD at 57.047 kb on + strand, within dppD at 57.048 kb on - strand, within dppD at 57.065 kb on + strand, within dppD at 57.065 kb on + strand, within dppD at 57.065 kb on + strand, within dppD at 57.066 kb on - strand, within dppD at 57.066 kb on - strand, within dppD at 57.151 kb on + strand, within dppD at 57.151 kb on + strand, within dppD at 57.152 kb on - strand, within dppD at 57.152 kb on - strand, within dppD at 57.214 kb on + strand, within dppD at 57.216 kb on + strand, within dppD at 57.380 kb on + strand at 57.380 kb on + strand at 57.547 kb on - strand, within LU632_RS00285 at 57.684 kb on - strand, within LU632_RS00285 at 58.085 kb on + strand, within LU632_RS00285 at 58.085 kb on + strand, within LU632_RS00285 at 58.094 kb on - strand, within LU632_RS00285 at 58.148 kb on + strand, within LU632_RS00285 at 58.148 kb on + strand, within LU632_RS00285 at 58.148 kb on + strand, within LU632_RS00285 at 58.149 kb on - strand, within LU632_RS00285 at 58.149 kb on - strand, within LU632_RS00285 at 58.149 kb on - strand, within LU632_RS00285 at 58.149 kb on - strand, within LU632_RS00285 at 58.327 kb on + strand, within LU632_RS00285 at 58.388 kb on + strand at 58.534 kb on + strand at 58.534 kb on + strand at 58.535 kb on - strand at 58.535 kb on - strand at 58.536 kb on + strand at 58.553 kb on + strand at 59.002 kb on - strand, within LU632_RS00290 at 59.131 kb on - strand, within LU632_RS00290 at 59.160 kb on + strand, within LU632_RS00290 at 59.166 kb on - strand, within LU632_RS00290 at 59.250 kb on - strand, within LU632_RS00290 at 59.293 kb on + strand, within LU632_RS00290 at 59.356 kb on - strand, within LU632_RS00290
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 56,480 + -0.2 56,551 + +0.4 56,638 - dppD LU632_RS00280 0.17 -0.4 56,645 - dppD LU632_RS00280 0.18 -1.2 56,653 - dppD LU632_RS00280 0.19 -1.2 56,786 - dppD LU632_RS00280 0.32 +1.5 57,046 - dppD LU632_RS00280 0.58 +0.4 57,046 - dppD LU632_RS00280 0.58 -0.7 57,047 + dppD LU632_RS00280 0.58 -0.2 57,048 - dppD LU632_RS00280 0.59 -0.2 57,065 + dppD LU632_RS00280 0.60 +0.1 57,065 + dppD LU632_RS00280 0.60 +0.7 57,065 + dppD LU632_RS00280 0.60 +0.1 57,066 - dppD LU632_RS00280 0.60 +0.0 57,066 - dppD LU632_RS00280 0.60 -0.4 57,151 + dppD LU632_RS00280 0.69 +0.1 57,151 + dppD LU632_RS00280 0.69 -0.1 57,152 - dppD LU632_RS00280 0.69 -0.8 57,152 - dppD LU632_RS00280 0.69 -0.3 57,214 + dppD LU632_RS00280 0.75 -0.2 57,216 + dppD LU632_RS00280 0.76 -0.2 57,380 + +0.9 57,380 + +1.0 57,547 - LU632_RS00285 0.12 +0.3 57,684 - LU632_RS00285 0.25 -0.1 58,085 + LU632_RS00285 0.64 -0.8 58,085 + LU632_RS00285 0.64 -0.5 58,094 - LU632_RS00285 0.65 +0.3 58,148 + LU632_RS00285 0.71 -0.7 58,148 + LU632_RS00285 0.71 +0.2 58,148 + LU632_RS00285 0.71 -0.0 58,149 - LU632_RS00285 0.71 +0.0 58,149 - LU632_RS00285 0.71 -0.4 58,149 - LU632_RS00285 0.71 -1.0 58,149 - LU632_RS00285 0.71 +0.9 58,327 + LU632_RS00285 0.88 -0.0 58,388 + -0.2 58,534 + -0.5 58,534 + +0.1 58,535 - -0.7 58,535 - +0.2 58,536 + -0.2 58,553 + -0.4 59,002 - LU632_RS00290 0.40 +0.0 59,131 - LU632_RS00290 0.52 +0.3 59,160 + LU632_RS00290 0.55 -0.1 59,166 - LU632_RS00290 0.56 -0.1 59,250 - LU632_RS00290 0.64 -1.2 59,293 + LU632_RS00290 0.68 -0.2 59,356 - LU632_RS00290 0.74 +0.8
Or see this region's nucleotide sequence