Experiment: Control_TnA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03712 and ECD_03713 overlap by 92 nucleotides ECD_03713 and ECD_03714 overlap by 55 nucleotides
ECD_03712: ECD_03712 - Carbamate kinase-like protein yahI, at 3,910,904 to 3,911,944
_03712
ECD_03713: ECD_03713 - hypothetical protein, at 3,911,853 to 3,913,328
_03713
ECD_03714: ECD_03714 - hypothetical protein, at 3,913,274 to 3,914,833
_03714
Position (kb)
3911
3912
3913
3914 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3910.870 kb on + strand at 3910.881 kb on + strand at 3910.881 kb on + strand at 3910.881 kb on + strand at 3910.882 kb on - strand at 3910.949 kb on + strand at 3911.137 kb on + strand, within ECD_03712 at 3911.137 kb on + strand, within ECD_03712 at 3911.592 kb on + strand, within ECD_03712 at 3911.593 kb on - strand, within ECD_03712 at 3911.611 kb on + strand, within ECD_03712 at 3911.611 kb on + strand, within ECD_03712 at 3911.612 kb on - strand, within ECD_03712 at 3911.711 kb on + strand, within ECD_03712 at 3911.712 kb on - strand, within ECD_03712 at 3911.714 kb on + strand, within ECD_03712 at 3911.740 kb on + strand, within ECD_03712 at 3911.749 kb on + strand, within ECD_03712 at 3911.749 kb on + strand, within ECD_03712 at 3911.749 kb on + strand, within ECD_03712 at 3911.749 kb on + strand, within ECD_03712 at 3911.750 kb on - strand, within ECD_03712 at 3911.750 kb on - strand, within ECD_03712 at 3911.778 kb on + strand, within ECD_03712 at 3911.778 kb on + strand, within ECD_03712 at 3911.778 kb on + strand, within ECD_03712 at 3911.792 kb on - strand, within ECD_03712 at 3911.792 kb on - strand, within ECD_03712 at 3911.795 kb on - strand, within ECD_03712 at 3911.898 kb on + strand at 3911.898 kb on + strand at 3911.899 kb on - strand at 3912.071 kb on + strand, within ECD_03713 at 3912.071 kb on + strand, within ECD_03713 at 3912.072 kb on - strand, within ECD_03713 at 3912.110 kb on + strand, within ECD_03713 at 3912.110 kb on + strand, within ECD_03713 at 3912.119 kb on + strand, within ECD_03713 at 3912.210 kb on - strand, within ECD_03713 at 3912.411 kb on - strand, within ECD_03713 at 3912.579 kb on - strand, within ECD_03713 at 3912.746 kb on + strand, within ECD_03713 at 3912.752 kb on + strand, within ECD_03713 at 3912.752 kb on + strand, within ECD_03713 at 3912.835 kb on + strand, within ECD_03713 at 3912.836 kb on - strand, within ECD_03713 at 3912.933 kb on - strand, within ECD_03713 at 3912.995 kb on + strand, within ECD_03713 at 3912.995 kb on + strand, within ECD_03713 at 3912.996 kb on - strand, within ECD_03713 at 3913.031 kb on + strand, within ECD_03713 at 3913.032 kb on - strand, within ECD_03713 at 3913.119 kb on + strand, within ECD_03713 at 3913.119 kb on + strand, within ECD_03713 at 3913.119 kb on + strand, within ECD_03713 at 3913.119 kb on + strand, within ECD_03713 at 3913.119 kb on + strand, within ECD_03713 at 3913.120 kb on - strand, within ECD_03713 at 3913.120 kb on - strand, within ECD_03713 at 3913.120 kb on - strand, within ECD_03713 at 3913.120 kb on - strand, within ECD_03713 at 3913.120 kb on - strand, within ECD_03713 at 3913.212 kb on - strand at 3913.230 kb on + strand at 3913.263 kb on - strand at 3913.267 kb on - strand at 3913.271 kb on + strand at 3913.271 kb on + strand at 3913.271 kb on + strand at 3913.272 kb on - strand at 3913.272 kb on - strand at 3913.377 kb on - strand at 3913.385 kb on + strand at 3913.400 kb on + strand at 3913.401 kb on - strand at 3913.401 kb on - strand at 3913.453 kb on + strand, within ECD_03714 at 3913.502 kb on - strand, within ECD_03714 at 3913.502 kb on - strand, within ECD_03714 at 3913.523 kb on + strand, within ECD_03714 at 3913.523 kb on + strand, within ECD_03714 at 3913.535 kb on + strand, within ECD_03714 at 3913.679 kb on - strand, within ECD_03714 at 3913.747 kb on + strand, within ECD_03714 at 3913.747 kb on + strand, within ECD_03714 at 3913.747 kb on + strand, within ECD_03714 at 3913.747 kb on + strand, within ECD_03714 at 3913.948 kb on + strand, within ECD_03714 at 3914.079 kb on - strand, within ECD_03714 at 3914.111 kb on + strand, within ECD_03714 at 3914.111 kb on + strand, within ECD_03714 at 3914.112 kb on - strand, within ECD_03714 at 3914.186 kb on - strand, within ECD_03714 at 3914.303 kb on - strand, within ECD_03714
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnA remove 3,910,870 + +0.2 3,910,881 + +0.1 3,910,881 + +0.6 3,910,881 + -0.2 3,910,882 - -0.3 3,910,949 + +0.4 3,911,137 + ECD_03712 0.22 +0.0 3,911,137 + ECD_03712 0.22 +0.4 3,911,592 + ECD_03712 0.66 +0.8 3,911,593 - ECD_03712 0.66 +0.7 3,911,611 + ECD_03712 0.68 -0.1 3,911,611 + ECD_03712 0.68 +0.6 3,911,612 - ECD_03712 0.68 -0.5 3,911,711 + ECD_03712 0.78 +0.3 3,911,712 - ECD_03712 0.78 -0.0 3,911,714 + ECD_03712 0.78 +0.2 3,911,740 + ECD_03712 0.80 +1.6 3,911,749 + ECD_03712 0.81 +1.8 3,911,749 + ECD_03712 0.81 -1.8 3,911,749 + ECD_03712 0.81 +0.7 3,911,749 + ECD_03712 0.81 -0.5 3,911,750 - ECD_03712 0.81 -0.3 3,911,750 - ECD_03712 0.81 +1.2 3,911,778 + ECD_03712 0.84 +0.2 3,911,778 + ECD_03712 0.84 -0.1 3,911,778 + ECD_03712 0.84 +0.9 3,911,792 - ECD_03712 0.85 +0.3 3,911,792 - ECD_03712 0.85 -0.6 3,911,795 - ECD_03712 0.86 +0.0 3,911,898 + +0.4 3,911,898 + +0.1 3,911,899 - -1.6 3,912,071 + ECD_03713 0.15 +0.6 3,912,071 + ECD_03713 0.15 +0.8 3,912,072 - ECD_03713 0.15 -0.0 3,912,110 + ECD_03713 0.17 -0.7 3,912,110 + ECD_03713 0.17 -0.1 3,912,119 + ECD_03713 0.18 +0.3 3,912,210 - ECD_03713 0.24 -0.0 3,912,411 - ECD_03713 0.38 +0.4 3,912,579 - ECD_03713 0.49 +1.0 3,912,746 + ECD_03713 0.61 +0.2 3,912,752 + ECD_03713 0.61 -0.7 3,912,752 + ECD_03713 0.61 -0.6 3,912,835 + ECD_03713 0.67 -0.2 3,912,836 - ECD_03713 0.67 +1.0 3,912,933 - ECD_03713 0.73 +0.1 3,912,995 + ECD_03713 0.77 +0.3 3,912,995 + ECD_03713 0.77 +1.0 3,912,996 - ECD_03713 0.77 +0.2 3,913,031 + ECD_03713 0.80 +1.6 3,913,032 - ECD_03713 0.80 +0.0 3,913,119 + ECD_03713 0.86 -0.1 3,913,119 + ECD_03713 0.86 +0.0 3,913,119 + ECD_03713 0.86 +0.5 3,913,119 + ECD_03713 0.86 -0.4 3,913,119 + ECD_03713 0.86 +0.6 3,913,120 - ECD_03713 0.86 +0.9 3,913,120 - ECD_03713 0.86 +0.1 3,913,120 - ECD_03713 0.86 -0.0 3,913,120 - ECD_03713 0.86 +1.8 3,913,120 - ECD_03713 0.86 +1.2 3,913,212 - +0.7 3,913,230 + -0.2 3,913,263 - +0.9 3,913,267 - -1.2 3,913,271 + -1.1 3,913,271 + -1.1 3,913,271 + +0.8 3,913,272 - +1.3 3,913,272 - +0.2 3,913,377 - -0.3 3,913,385 + -0.4 3,913,400 + +0.6 3,913,401 - -1.1 3,913,401 - +0.0 3,913,453 + ECD_03714 0.11 -0.3 3,913,502 - ECD_03714 0.15 +0.0 3,913,502 - ECD_03714 0.15 +0.2 3,913,523 + ECD_03714 0.16 +1.3 3,913,523 + ECD_03714 0.16 +1.0 3,913,535 + ECD_03714 0.17 +0.7 3,913,679 - ECD_03714 0.26 +0.5 3,913,747 + ECD_03714 0.30 +1.5 3,913,747 + ECD_03714 0.30 +0.5 3,913,747 + ECD_03714 0.30 +0.4 3,913,747 + ECD_03714 0.30 +0.0 3,913,948 + ECD_03714 0.43 -1.1 3,914,079 - ECD_03714 0.52 -0.1 3,914,111 + ECD_03714 0.54 +0.2 3,914,111 + ECD_03714 0.54 +0.2 3,914,112 - ECD_03714 0.54 -1.7 3,914,186 - ECD_03714 0.58 +0.4 3,914,303 - ECD_03714 0.66 -1.2
Or see this region's nucleotide sequence