Strain Fitness in Escherichia coli BL21 around ECD_03713

Experiment: Control_TnA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03712 and ECD_03713 overlap by 92 nucleotidesECD_03713 and ECD_03714 overlap by 55 nucleotides ECD_03712: ECD_03712 - Carbamate kinase-like protein yahI, at 3,910,904 to 3,911,944 _03712 ECD_03713: ECD_03713 - hypothetical protein, at 3,911,853 to 3,913,328 _03713 ECD_03714: ECD_03714 - hypothetical protein, at 3,913,274 to 3,914,833 _03714 Position (kb) 3911 3912 3913 3914Strain fitness (log2 ratio) -2 -1 0 1 2at 3910.870 kb on + strandat 3910.881 kb on + strandat 3910.881 kb on + strandat 3910.881 kb on + strandat 3910.882 kb on - strandat 3910.949 kb on + strandat 3911.137 kb on + strand, within ECD_03712at 3911.137 kb on + strand, within ECD_03712at 3911.592 kb on + strand, within ECD_03712at 3911.593 kb on - strand, within ECD_03712at 3911.611 kb on + strand, within ECD_03712at 3911.611 kb on + strand, within ECD_03712at 3911.612 kb on - strand, within ECD_03712at 3911.711 kb on + strand, within ECD_03712at 3911.712 kb on - strand, within ECD_03712at 3911.714 kb on + strand, within ECD_03712at 3911.740 kb on + strand, within ECD_03712at 3911.749 kb on + strand, within ECD_03712at 3911.749 kb on + strand, within ECD_03712at 3911.749 kb on + strand, within ECD_03712at 3911.749 kb on + strand, within ECD_03712at 3911.750 kb on - strand, within ECD_03712at 3911.750 kb on - strand, within ECD_03712at 3911.778 kb on + strand, within ECD_03712at 3911.778 kb on + strand, within ECD_03712at 3911.778 kb on + strand, within ECD_03712at 3911.792 kb on - strand, within ECD_03712at 3911.792 kb on - strand, within ECD_03712at 3911.795 kb on - strand, within ECD_03712at 3911.898 kb on + strandat 3911.898 kb on + strandat 3911.899 kb on - strandat 3912.071 kb on + strand, within ECD_03713at 3912.071 kb on + strand, within ECD_03713at 3912.072 kb on - strand, within ECD_03713at 3912.110 kb on + strand, within ECD_03713at 3912.110 kb on + strand, within ECD_03713at 3912.119 kb on + strand, within ECD_03713at 3912.210 kb on - strand, within ECD_03713at 3912.411 kb on - strand, within ECD_03713at 3912.579 kb on - strand, within ECD_03713at 3912.746 kb on + strand, within ECD_03713at 3912.752 kb on + strand, within ECD_03713at 3912.752 kb on + strand, within ECD_03713at 3912.835 kb on + strand, within ECD_03713at 3912.836 kb on - strand, within ECD_03713at 3912.933 kb on - strand, within ECD_03713at 3912.995 kb on + strand, within ECD_03713at 3912.995 kb on + strand, within ECD_03713at 3912.996 kb on - strand, within ECD_03713at 3913.031 kb on + strand, within ECD_03713at 3913.032 kb on - strand, within ECD_03713at 3913.119 kb on + strand, within ECD_03713at 3913.119 kb on + strand, within ECD_03713at 3913.119 kb on + strand, within ECD_03713at 3913.119 kb on + strand, within ECD_03713at 3913.119 kb on + strand, within ECD_03713at 3913.120 kb on - strand, within ECD_03713at 3913.120 kb on - strand, within ECD_03713at 3913.120 kb on - strand, within ECD_03713at 3913.120 kb on - strand, within ECD_03713at 3913.120 kb on - strand, within ECD_03713at 3913.212 kb on - strandat 3913.230 kb on + strandat 3913.263 kb on - strandat 3913.267 kb on - strandat 3913.271 kb on + strandat 3913.271 kb on + strandat 3913.271 kb on + strandat 3913.272 kb on - strandat 3913.272 kb on - strandat 3913.377 kb on - strandat 3913.385 kb on + strandat 3913.400 kb on + strandat 3913.401 kb on - strandat 3913.401 kb on - strandat 3913.453 kb on + strand, within ECD_03714at 3913.502 kb on - strand, within ECD_03714at 3913.502 kb on - strand, within ECD_03714at 3913.523 kb on + strand, within ECD_03714at 3913.523 kb on + strand, within ECD_03714at 3913.535 kb on + strand, within ECD_03714at 3913.679 kb on - strand, within ECD_03714at 3913.747 kb on + strand, within ECD_03714at 3913.747 kb on + strand, within ECD_03714at 3913.747 kb on + strand, within ECD_03714at 3913.747 kb on + strand, within ECD_03714at 3913.948 kb on + strand, within ECD_03714at 3914.079 kb on - strand, within ECD_03714at 3914.111 kb on + strand, within ECD_03714at 3914.111 kb on + strand, within ECD_03714at 3914.112 kb on - strand, within ECD_03714at 3914.186 kb on - strand, within ECD_03714at 3914.303 kb on - strand, within ECD_03714

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnA
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3,910,870 + +0.2
3,910,881 + +0.1
3,910,881 + +0.6
3,910,881 + -0.2
3,910,882 - -0.3
3,910,949 + +0.4
3,911,137 + ECD_03712 0.22 +0.0
3,911,137 + ECD_03712 0.22 +0.4
3,911,592 + ECD_03712 0.66 +0.8
3,911,593 - ECD_03712 0.66 +0.7
3,911,611 + ECD_03712 0.68 -0.1
3,911,611 + ECD_03712 0.68 +0.6
3,911,612 - ECD_03712 0.68 -0.5
3,911,711 + ECD_03712 0.78 +0.3
3,911,712 - ECD_03712 0.78 -0.0
3,911,714 + ECD_03712 0.78 +0.2
3,911,740 + ECD_03712 0.80 +1.6
3,911,749 + ECD_03712 0.81 +1.8
3,911,749 + ECD_03712 0.81 -1.8
3,911,749 + ECD_03712 0.81 +0.7
3,911,749 + ECD_03712 0.81 -0.5
3,911,750 - ECD_03712 0.81 -0.3
3,911,750 - ECD_03712 0.81 +1.2
3,911,778 + ECD_03712 0.84 +0.2
3,911,778 + ECD_03712 0.84 -0.1
3,911,778 + ECD_03712 0.84 +0.9
3,911,792 - ECD_03712 0.85 +0.3
3,911,792 - ECD_03712 0.85 -0.6
3,911,795 - ECD_03712 0.86 +0.0
3,911,898 + +0.4
3,911,898 + +0.1
3,911,899 - -1.6
3,912,071 + ECD_03713 0.15 +0.6
3,912,071 + ECD_03713 0.15 +0.8
3,912,072 - ECD_03713 0.15 -0.0
3,912,110 + ECD_03713 0.17 -0.7
3,912,110 + ECD_03713 0.17 -0.1
3,912,119 + ECD_03713 0.18 +0.3
3,912,210 - ECD_03713 0.24 -0.0
3,912,411 - ECD_03713 0.38 +0.4
3,912,579 - ECD_03713 0.49 +1.0
3,912,746 + ECD_03713 0.61 +0.2
3,912,752 + ECD_03713 0.61 -0.7
3,912,752 + ECD_03713 0.61 -0.6
3,912,835 + ECD_03713 0.67 -0.2
3,912,836 - ECD_03713 0.67 +1.0
3,912,933 - ECD_03713 0.73 +0.1
3,912,995 + ECD_03713 0.77 +0.3
3,912,995 + ECD_03713 0.77 +1.0
3,912,996 - ECD_03713 0.77 +0.2
3,913,031 + ECD_03713 0.80 +1.6
3,913,032 - ECD_03713 0.80 +0.0
3,913,119 + ECD_03713 0.86 -0.1
3,913,119 + ECD_03713 0.86 +0.0
3,913,119 + ECD_03713 0.86 +0.5
3,913,119 + ECD_03713 0.86 -0.4
3,913,119 + ECD_03713 0.86 +0.6
3,913,120 - ECD_03713 0.86 +0.9
3,913,120 - ECD_03713 0.86 +0.1
3,913,120 - ECD_03713 0.86 -0.0
3,913,120 - ECD_03713 0.86 +1.8
3,913,120 - ECD_03713 0.86 +1.2
3,913,212 - +0.7
3,913,230 + -0.2
3,913,263 - +0.9
3,913,267 - -1.2
3,913,271 + -1.1
3,913,271 + -1.1
3,913,271 + +0.8
3,913,272 - +1.3
3,913,272 - +0.2
3,913,377 - -0.3
3,913,385 + -0.4
3,913,400 + +0.6
3,913,401 - -1.1
3,913,401 - +0.0
3,913,453 + ECD_03714 0.11 -0.3
3,913,502 - ECD_03714 0.15 +0.0
3,913,502 - ECD_03714 0.15 +0.2
3,913,523 + ECD_03714 0.16 +1.3
3,913,523 + ECD_03714 0.16 +1.0
3,913,535 + ECD_03714 0.17 +0.7
3,913,679 - ECD_03714 0.26 +0.5
3,913,747 + ECD_03714 0.30 +1.5
3,913,747 + ECD_03714 0.30 +0.5
3,913,747 + ECD_03714 0.30 +0.4
3,913,747 + ECD_03714 0.30 +0.0
3,913,948 + ECD_03714 0.43 -1.1
3,914,079 - ECD_03714 0.52 -0.1
3,914,111 + ECD_03714 0.54 +0.2
3,914,111 + ECD_03714 0.54 +0.2
3,914,112 - ECD_03714 0.54 -1.7
3,914,186 - ECD_03714 0.58 +0.4
3,914,303 - ECD_03714 0.66 -1.2

Or see this region's nucleotide sequence