Strain Fitness in Escherichia coli BL21 around ECD_02649

Experiment: Control_TnA

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02648 and ECD_02649 are separated by 118 nucleotidesECD_02649 and ECD_02650 are separated by 4 nucleotides ECD_02648: ECD_02648 - L-fuculose phosphate aldolase, at 2,767,188 to 2,768,132 _02648 ECD_02649: ECD_02649 - L-ribulokinase AraB-like protein, at 2,768,251 to 2,769,879 _02649 ECD_02650: ECD_02650 - D-ribose-binding periplasmic protein, at 2,769,884 to 2,770,957 _02650 Position (kb) 2768 2769 2770Strain fitness (log2 ratio) -1 0 1 2at 2768.042 kb on - strandat 2768.069 kb on + strandat 2768.190 kb on + strandat 2768.191 kb on - strandat 2768.202 kb on - strandat 2768.202 kb on - strandat 2768.229 kb on - strandat 2768.229 kb on - strandat 2768.313 kb on + strandat 2768.513 kb on - strand, within ECD_02649at 2768.560 kb on - strand, within ECD_02649at 2768.589 kb on + strand, within ECD_02649at 2768.589 kb on + strand, within ECD_02649at 2768.589 kb on + strand, within ECD_02649at 2768.589 kb on + strand, within ECD_02649at 2768.589 kb on + strand, within ECD_02649at 2768.590 kb on - strand, within ECD_02649at 2768.669 kb on - strand, within ECD_02649at 2768.743 kb on + strand, within ECD_02649at 2768.974 kb on + strand, within ECD_02649at 2769.109 kb on - strand, within ECD_02649at 2769.227 kb on - strand, within ECD_02649at 2769.232 kb on - strand, within ECD_02649at 2769.232 kb on - strand, within ECD_02649at 2769.256 kb on + strand, within ECD_02649at 2769.271 kb on - strand, within ECD_02649at 2769.507 kb on + strand, within ECD_02649at 2769.508 kb on - strand, within ECD_02649at 2769.508 kb on - strand, within ECD_02649at 2769.508 kb on - strand, within ECD_02649at 2769.508 kb on - strand, within ECD_02649at 2769.508 kb on - strand, within ECD_02649at 2769.508 kb on - strand, within ECD_02649at 2769.508 kb on - strand, within ECD_02649at 2769.508 kb on - strand, within ECD_02649at 2769.510 kb on + strand, within ECD_02649at 2769.511 kb on - strand, within ECD_02649at 2769.511 kb on - strand, within ECD_02649at 2769.588 kb on + strand, within ECD_02649at 2769.832 kb on - strandat 2770.088 kb on - strand, within ECD_02650at 2770.088 kb on - strand, within ECD_02650at 2770.088 kb on - strand, within ECD_02650at 2770.284 kb on - strand, within ECD_02650at 2770.376 kb on - strand, within ECD_02650at 2770.396 kb on + strand, within ECD_02650at 2770.660 kb on - strand, within ECD_02650at 2770.660 kb on - strand, within ECD_02650at 2770.761 kb on - strand, within ECD_02650at 2770.806 kb on - strand, within ECD_02650at 2770.812 kb on + strand, within ECD_02650at 2770.813 kb on - strand, within ECD_02650at 2770.816 kb on + strand, within ECD_02650at 2770.817 kb on - strand, within ECD_02650

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnA
remove
2,768,042 - +0.3
2,768,069 + +1.4
2,768,190 + -1.0
2,768,191 - +0.1
2,768,202 - -0.5
2,768,202 - -0.8
2,768,229 - -1.1
2,768,229 - +0.0
2,768,313 + -0.3
2,768,513 - ECD_02649 0.16 -0.3
2,768,560 - ECD_02649 0.19 -0.1
2,768,589 + ECD_02649 0.21 +0.3
2,768,589 + ECD_02649 0.21 +0.4
2,768,589 + ECD_02649 0.21 +0.4
2,768,589 + ECD_02649 0.21 +0.2
2,768,589 + ECD_02649 0.21 +2.3
2,768,590 - ECD_02649 0.21 -0.4
2,768,669 - ECD_02649 0.26 +0.2
2,768,743 + ECD_02649 0.30 -0.8
2,768,974 + ECD_02649 0.44 -0.0
2,769,109 - ECD_02649 0.53 -0.1
2,769,227 - ECD_02649 0.60 -1.0
2,769,232 - ECD_02649 0.60 -0.3
2,769,232 - ECD_02649 0.60 +0.5
2,769,256 + ECD_02649 0.62 +0.0
2,769,271 - ECD_02649 0.63 -0.3
2,769,507 + ECD_02649 0.77 -0.6
2,769,508 - ECD_02649 0.77 +0.7
2,769,508 - ECD_02649 0.77 +0.2
2,769,508 - ECD_02649 0.77 +0.9
2,769,508 - ECD_02649 0.77 +0.7
2,769,508 - ECD_02649 0.77 +0.9
2,769,508 - ECD_02649 0.77 +1.9
2,769,508 - ECD_02649 0.77 +0.6
2,769,508 - ECD_02649 0.77 +0.3
2,769,510 + ECD_02649 0.77 +0.6
2,769,511 - ECD_02649 0.77 -0.8
2,769,511 - ECD_02649 0.77 +1.9
2,769,588 + ECD_02649 0.82 +0.9
2,769,832 - +0.4
2,770,088 - ECD_02650 0.19 +0.1
2,770,088 - ECD_02650 0.19 -0.2
2,770,088 - ECD_02650 0.19 +0.3
2,770,284 - ECD_02650 0.37 -0.6
2,770,376 - ECD_02650 0.46 -0.6
2,770,396 + ECD_02650 0.48 -0.3
2,770,660 - ECD_02650 0.72 -0.0
2,770,660 - ECD_02650 0.72 +0.3
2,770,761 - ECD_02650 0.82 +0.3
2,770,806 - ECD_02650 0.86 -0.1
2,770,812 + ECD_02650 0.86 +1.1
2,770,813 - ECD_02650 0.86 +0.3
2,770,816 + ECD_02650 0.87 +0.1
2,770,817 - ECD_02650 0.87 +0.3

Or see this region's nucleotide sequence