Experiment: Control_TnA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02474 and ECD_02475 are separated by 47 nucleotides ECD_02475 and ECD_02476 are separated by 206 nucleotides ECD_02476 and ECD_02477 are separated by 68 nucleotides
ECD_02474: ECD_02474 - uracil-DNA-glycosylase, at 2,583,354 to 2,584,043
_02474
ECD_02475: ECD_02475 - putative methyltransferase, at 2,584,091 to 2,585,128
_02475
ECD_02476: ECD_02476 - thioredoxin 2, at 2,585,335 to 2,585,754
_02476
ECD_02477: ECD_02477 - DTW domain protein, at 2,585,823 to 2,586,521
_02477
Position (kb)
2584
2585
2586 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2583.128 kb on - strand at 2583.129 kb on + strand at 2583.129 kb on + strand at 2583.130 kb on - strand at 2583.130 kb on - strand at 2583.130 kb on - strand at 2583.130 kb on - strand at 2583.130 kb on - strand at 2583.130 kb on - strand at 2583.131 kb on + strand at 2583.132 kb on - strand at 2583.132 kb on - strand at 2583.132 kb on - strand at 2583.132 kb on - strand at 2583.132 kb on - strand at 2583.318 kb on + strand at 2583.323 kb on + strand at 2583.627 kb on - strand, within ECD_02474 at 2583.630 kb on + strand, within ECD_02474 at 2583.630 kb on + strand, within ECD_02474 at 2583.630 kb on + strand, within ECD_02474 at 2583.632 kb on + strand, within ECD_02474 at 2583.647 kb on + strand, within ECD_02474 at 2583.881 kb on + strand, within ECD_02474 at 2584.022 kb on - strand at 2584.024 kb on + strand at 2584.231 kb on - strand, within ECD_02475 at 2584.231 kb on - strand, within ECD_02475 at 2584.511 kb on - strand, within ECD_02475 at 2584.669 kb on - strand, within ECD_02475 at 2584.669 kb on - strand, within ECD_02475 at 2584.669 kb on - strand, within ECD_02475 at 2585.050 kb on + strand at 2585.051 kb on - strand at 2585.083 kb on - strand at 2585.083 kb on - strand at 2585.083 kb on - strand at 2585.083 kb on - strand at 2585.215 kb on - strand at 2585.220 kb on - strand at 2585.220 kb on - strand at 2585.220 kb on - strand at 2585.224 kb on - strand at 2585.224 kb on - strand at 2585.267 kb on + strand at 2585.272 kb on - strand at 2585.272 kb on - strand at 2585.276 kb on + strand at 2585.276 kb on + strand at 2585.330 kb on + strand at 2585.330 kb on + strand at 2585.331 kb on - strand at 2585.334 kb on + strand at 2585.335 kb on - strand at 2585.335 kb on - strand at 2585.448 kb on + strand, within ECD_02476 at 2585.492 kb on + strand, within ECD_02476 at 2585.493 kb on - strand, within ECD_02476 at 2585.649 kb on + strand, within ECD_02476 at 2585.649 kb on + strand, within ECD_02476 at 2585.653 kb on - strand, within ECD_02476 at 2585.752 kb on + strand at 2585.822 kb on + strand at 2585.960 kb on + strand, within ECD_02477
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnA remove 2,583,128 - -0.7 2,583,129 + -1.2 2,583,129 + +0.5 2,583,130 - +0.1 2,583,130 - -2.3 2,583,130 - +0.2 2,583,130 - +1.2 2,583,130 - +0.5 2,583,130 - -0.1 2,583,131 + -1.0 2,583,132 - +0.8 2,583,132 - +0.0 2,583,132 - +0.0 2,583,132 - +1.0 2,583,132 - +0.6 2,583,318 + +1.3 2,583,323 + +0.3 2,583,627 - ECD_02474 0.40 +0.2 2,583,630 + ECD_02474 0.40 +0.6 2,583,630 + ECD_02474 0.40 -0.6 2,583,630 + ECD_02474 0.40 -0.2 2,583,632 + ECD_02474 0.40 +0.9 2,583,647 + ECD_02474 0.42 -0.0 2,583,881 + ECD_02474 0.76 -0.8 2,584,022 - +0.7 2,584,024 + -0.1 2,584,231 - ECD_02475 0.13 -0.5 2,584,231 - ECD_02475 0.13 +0.7 2,584,511 - ECD_02475 0.40 -0.2 2,584,669 - ECD_02475 0.56 +0.3 2,584,669 - ECD_02475 0.56 -0.1 2,584,669 - ECD_02475 0.56 -1.0 2,585,050 + +0.0 2,585,051 - +0.2 2,585,083 - +0.5 2,585,083 - -0.5 2,585,083 - +0.6 2,585,083 - -1.4 2,585,215 - -0.9 2,585,220 - -0.8 2,585,220 - -0.2 2,585,220 - -0.0 2,585,224 - +0.1 2,585,224 - +0.0 2,585,267 + -0.6 2,585,272 - -0.7 2,585,272 - +0.2 2,585,276 + -0.1 2,585,276 + +0.5 2,585,330 + -0.6 2,585,330 + -0.1 2,585,331 - +0.2 2,585,334 + -0.2 2,585,335 - +0.7 2,585,335 - +0.2 2,585,448 + ECD_02476 0.27 +1.0 2,585,492 + ECD_02476 0.37 +0.1 2,585,493 - ECD_02476 0.38 +2.4 2,585,649 + ECD_02476 0.75 +0.8 2,585,649 + ECD_02476 0.75 -0.7 2,585,653 - ECD_02476 0.76 -0.2 2,585,752 + -1.4 2,585,822 + -1.1 2,585,960 + ECD_02477 0.20 +1.0
Or see this region's nucleotide sequence