Strain Fitness in Escherichia coli BL21 around ECD_02062

Experiment: Control_TnA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02061 and ECD_02062 are separated by 251 nucleotidesECD_02062 and ECD_02063 are separated by 195 nucleotides ECD_02061: ECD_02061 - putative ABC transporter periplasmic binding protein, at 2,113,427 to 2,114,344 _02061 ECD_02062: ECD_02062 - beta-D-glucoside glucohydrolase, periplasmic, at 2,114,596 to 2,116,893 _02062 ECD_02063: ECD_02063 - D-lactate dehydrogenase, FAD-binding, NADH independent, at 2,117,089 to 2,118,804 _02063 Position (kb) 2114 2115 2116 2117Strain fitness (log2 ratio) -2 -1 0 1at 2113.617 kb on + strand, within ECD_02061at 2113.618 kb on - strand, within ECD_02061at 2113.964 kb on - strand, within ECD_02061at 2114.398 kb on - strandat 2114.451 kb on + strandat 2114.452 kb on - strandat 2114.459 kb on + strandat 2114.469 kb on - strandat 2114.678 kb on + strandat 2114.952 kb on - strand, within ECD_02062at 2114.952 kb on - strand, within ECD_02062at 2114.952 kb on - strand, within ECD_02062at 2115.038 kb on + strand, within ECD_02062at 2115.066 kb on - strand, within ECD_02062at 2115.129 kb on - strand, within ECD_02062at 2115.522 kb on - strand, within ECD_02062at 2115.833 kb on + strand, within ECD_02062at 2115.848 kb on - strand, within ECD_02062at 2115.924 kb on - strand, within ECD_02062at 2115.927 kb on - strand, within ECD_02062at 2116.186 kb on - strand, within ECD_02062at 2116.187 kb on + strand, within ECD_02062at 2116.188 kb on - strand, within ECD_02062at 2116.230 kb on - strand, within ECD_02062at 2116.359 kb on - strand, within ECD_02062at 2116.359 kb on - strand, within ECD_02062at 2116.359 kb on - strand, within ECD_02062at 2116.363 kb on - strand, within ECD_02062at 2117.050 kb on + strandat 2117.362 kb on + strand, within ECD_02063at 2117.556 kb on + strand, within ECD_02063at 2117.625 kb on - strand, within ECD_02063at 2117.771 kb on - strand, within ECD_02063at 2117.771 kb on - strand, within ECD_02063at 2117.771 kb on - strand, within ECD_02063at 2117.882 kb on + strand, within ECD_02063

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnA
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2,113,617 + ECD_02061 0.21 -0.2
2,113,618 - ECD_02061 0.21 -2.3
2,113,964 - ECD_02061 0.58 +0.9
2,114,398 - -0.1
2,114,451 + -1.1
2,114,452 - -1.0
2,114,459 + -0.7
2,114,469 - +0.6
2,114,678 + -1.3
2,114,952 - ECD_02062 0.15 +0.3
2,114,952 - ECD_02062 0.15 +0.4
2,114,952 - ECD_02062 0.15 -0.1
2,115,038 + ECD_02062 0.19 -1.2
2,115,066 - ECD_02062 0.20 +0.6
2,115,129 - ECD_02062 0.23 +0.4
2,115,522 - ECD_02062 0.40 -0.5
2,115,833 + ECD_02062 0.54 +0.3
2,115,848 - ECD_02062 0.54 +0.0
2,115,924 - ECD_02062 0.58 -1.1
2,115,927 - ECD_02062 0.58 +0.1
2,116,186 - ECD_02062 0.69 +0.4
2,116,187 + ECD_02062 0.69 -0.3
2,116,188 - ECD_02062 0.69 -0.3
2,116,230 - ECD_02062 0.71 -0.4
2,116,359 - ECD_02062 0.77 -0.7
2,116,359 - ECD_02062 0.77 -0.4
2,116,359 - ECD_02062 0.77 -0.2
2,116,363 - ECD_02062 0.77 -0.4
2,117,050 + -0.8
2,117,362 + ECD_02063 0.16 -0.2
2,117,556 + ECD_02063 0.27 -0.9
2,117,625 - ECD_02063 0.31 +0.8
2,117,771 - ECD_02063 0.40 +1.1
2,117,771 - ECD_02063 0.40 +0.8
2,117,771 - ECD_02063 0.40 +0.4
2,117,882 + ECD_02063 0.46 +0.5

Or see this region's nucleotide sequence