Experiment: Control_TnA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02061 and ECD_02062 are separated by 251 nucleotides ECD_02062 and ECD_02063 are separated by 195 nucleotides
ECD_02061: ECD_02061 - putative ABC transporter periplasmic binding protein, at 2,113,427 to 2,114,344
_02061
ECD_02062: ECD_02062 - beta-D-glucoside glucohydrolase, periplasmic, at 2,114,596 to 2,116,893
_02062
ECD_02063: ECD_02063 - D-lactate dehydrogenase, FAD-binding, NADH independent, at 2,117,089 to 2,118,804
_02063
Position (kb)
2114
2115
2116
2117 Strain fitness (log2 ratio)
-2
-1
0
1 at 2113.617 kb on + strand, within ECD_02061 at 2113.618 kb on - strand, within ECD_02061 at 2113.964 kb on - strand, within ECD_02061 at 2114.398 kb on - strand at 2114.451 kb on + strand at 2114.452 kb on - strand at 2114.459 kb on + strand at 2114.469 kb on - strand at 2114.678 kb on + strand at 2114.952 kb on - strand, within ECD_02062 at 2114.952 kb on - strand, within ECD_02062 at 2114.952 kb on - strand, within ECD_02062 at 2115.038 kb on + strand, within ECD_02062 at 2115.066 kb on - strand, within ECD_02062 at 2115.129 kb on - strand, within ECD_02062 at 2115.522 kb on - strand, within ECD_02062 at 2115.833 kb on + strand, within ECD_02062 at 2115.848 kb on - strand, within ECD_02062 at 2115.924 kb on - strand, within ECD_02062 at 2115.927 kb on - strand, within ECD_02062 at 2116.186 kb on - strand, within ECD_02062 at 2116.187 kb on + strand, within ECD_02062 at 2116.188 kb on - strand, within ECD_02062 at 2116.230 kb on - strand, within ECD_02062 at 2116.359 kb on - strand, within ECD_02062 at 2116.359 kb on - strand, within ECD_02062 at 2116.359 kb on - strand, within ECD_02062 at 2116.363 kb on - strand, within ECD_02062 at 2117.050 kb on + strand at 2117.362 kb on + strand, within ECD_02063 at 2117.556 kb on + strand, within ECD_02063 at 2117.625 kb on - strand, within ECD_02063 at 2117.771 kb on - strand, within ECD_02063 at 2117.771 kb on - strand, within ECD_02063 at 2117.771 kb on - strand, within ECD_02063 at 2117.882 kb on + strand, within ECD_02063
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnA remove 2,113,617 + ECD_02061 0.21 -0.2 2,113,618 - ECD_02061 0.21 -2.3 2,113,964 - ECD_02061 0.58 +0.9 2,114,398 - -0.1 2,114,451 + -1.1 2,114,452 - -1.0 2,114,459 + -0.7 2,114,469 - +0.6 2,114,678 + -1.3 2,114,952 - ECD_02062 0.15 +0.3 2,114,952 - ECD_02062 0.15 +0.4 2,114,952 - ECD_02062 0.15 -0.1 2,115,038 + ECD_02062 0.19 -1.2 2,115,066 - ECD_02062 0.20 +0.6 2,115,129 - ECD_02062 0.23 +0.4 2,115,522 - ECD_02062 0.40 -0.5 2,115,833 + ECD_02062 0.54 +0.3 2,115,848 - ECD_02062 0.54 +0.0 2,115,924 - ECD_02062 0.58 -1.1 2,115,927 - ECD_02062 0.58 +0.1 2,116,186 - ECD_02062 0.69 +0.4 2,116,187 + ECD_02062 0.69 -0.3 2,116,188 - ECD_02062 0.69 -0.3 2,116,230 - ECD_02062 0.71 -0.4 2,116,359 - ECD_02062 0.77 -0.7 2,116,359 - ECD_02062 0.77 -0.4 2,116,359 - ECD_02062 0.77 -0.2 2,116,363 - ECD_02062 0.77 -0.4 2,117,050 + -0.8 2,117,362 + ECD_02063 0.16 -0.2 2,117,556 + ECD_02063 0.27 -0.9 2,117,625 - ECD_02063 0.31 +0.8 2,117,771 - ECD_02063 0.40 +1.1 2,117,771 - ECD_02063 0.40 +0.8 2,117,771 - ECD_02063 0.40 +0.4 2,117,882 + ECD_02063 0.46 +0.5
Or see this region's nucleotide sequence