Experiment: Control_TnA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00635 and ECD_00636 are separated by 332 nucleotides ECD_00636 and ECD_00637 are separated by 202 nucleotides
ECD_00635: ECD_00635 - glucosamine-6-phosphate deaminase, at 662,685 to 663,485
_00635
ECD_00636: ECD_00636 - N-acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components, at 663,818 to 665,764
_00636
ECD_00637: ECD_00637 - glutamyl-tRNA synthetase, at 665,967 to 667,631
_00637
Position (kb) 663
664
665
666 Strain fitness (log2 ratio) -1
0
1
2 at 662.827 kb on - strand, within ECD_00635 at 662.912 kb on + strand, within ECD_00635 at 662.913 kb on - strand, within ECD_00635 at 662.913 kb on - strand, within ECD_00635 at 663.104 kb on - strand, within ECD_00635 at 663.265 kb on + strand, within ECD_00635 at 663.340 kb on + strand, within ECD_00635 at 663.509 kb on + strand at 663.509 kb on + strand at 663.542 kb on - strand at 663.618 kb on + strand at 663.814 kb on + strand at 663.921 kb on + strand at 663.938 kb on - strand at 663.978 kb on + strand at 664.055 kb on + strand, within ECD_00636 at 664.055 kb on + strand, within ECD_00636 at 664.126 kb on + strand, within ECD_00636 at 664.152 kb on - strand, within ECD_00636 at 664.476 kb on - strand, within ECD_00636 at 664.799 kb on + strand, within ECD_00636 at 664.800 kb on - strand, within ECD_00636 at 664.865 kb on - strand, within ECD_00636 at 664.868 kb on + strand, within ECD_00636 at 664.869 kb on - strand, within ECD_00636 at 664.897 kb on + strand, within ECD_00636 at 664.897 kb on + strand, within ECD_00636 at 664.897 kb on + strand, within ECD_00636 at 665.003 kb on + strand, within ECD_00636 at 665.003 kb on + strand, within ECD_00636 at 665.004 kb on - strand, within ECD_00636 at 665.004 kb on - strand, within ECD_00636 at 665.005 kb on + strand, within ECD_00636 at 665.053 kb on + strand, within ECD_00636 at 665.054 kb on - strand, within ECD_00636 at 665.054 kb on - strand, within ECD_00636 at 665.054 kb on - strand, within ECD_00636 at 665.056 kb on + strand, within ECD_00636 at 665.056 kb on + strand, within ECD_00636 at 665.110 kb on + strand, within ECD_00636 at 665.111 kb on - strand, within ECD_00636 at 665.111 kb on - strand, within ECD_00636 at 665.292 kb on + strand, within ECD_00636 at 665.422 kb on + strand, within ECD_00636 at 665.422 kb on + strand, within ECD_00636 at 665.524 kb on + strand, within ECD_00636 at 665.564 kb on - strand, within ECD_00636 at 665.592 kb on + strand at 665.680 kb on + strand at 665.920 kb on + strand at 665.928 kb on + strand at 665.928 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnA remove 662,827 - ECD_00635 0.18 -0.8 662,912 + ECD_00635 0.28 +0.2 662,913 - ECD_00635 0.28 +1.1 662,913 - ECD_00635 0.28 -1.1 663,104 - ECD_00635 0.52 +0.1 663,265 + ECD_00635 0.72 -0.9 663,340 + ECD_00635 0.82 -1.1 663,509 + -0.5 663,509 + -0.2 663,542 - +0.1 663,618 + +0.2 663,814 + -0.0 663,921 + +0.1 663,938 - +0.0 663,978 + +0.8 664,055 + ECD_00636 0.12 +0.3 664,055 + ECD_00636 0.12 +0.6 664,126 + ECD_00636 0.16 +0.7 664,152 - ECD_00636 0.17 +0.5 664,476 - ECD_00636 0.34 -0.6 664,799 + ECD_00636 0.50 -1.0 664,800 - ECD_00636 0.50 -1.1 664,865 - ECD_00636 0.54 +1.0 664,868 + ECD_00636 0.54 +0.2 664,869 - ECD_00636 0.54 -0.5 664,897 + ECD_00636 0.55 +0.4 664,897 + ECD_00636 0.55 +0.4 664,897 + ECD_00636 0.55 +0.2 665,003 + ECD_00636 0.61 -1.2 665,003 + ECD_00636 0.61 +0.5 665,004 - ECD_00636 0.61 -0.4 665,004 - ECD_00636 0.61 +0.6 665,005 + ECD_00636 0.61 +1.0 665,053 + ECD_00636 0.63 +0.4 665,054 - ECD_00636 0.63 -0.1 665,054 - ECD_00636 0.63 +0.4 665,054 - ECD_00636 0.63 +0.5 665,056 + ECD_00636 0.64 +0.3 665,056 + ECD_00636 0.64 +0.2 665,110 + ECD_00636 0.66 -0.4 665,111 - ECD_00636 0.66 +0.6 665,111 - ECD_00636 0.66 -0.4 665,292 + ECD_00636 0.76 -0.1 665,422 + ECD_00636 0.82 -1.0 665,422 + ECD_00636 0.82 -0.5 665,524 + ECD_00636 0.88 +0.5 665,564 - ECD_00636 0.90 +0.6 665,592 + +0.1 665,680 + -0.0 665,920 + -0.5 665,928 + +1.8 665,928 + -0.3
Or see this region's nucleotide sequence