Experiment: Control_TnA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00216 and ECD_00217 are separated by 239 nucleotides ECD_00217 and ECD_00218 are separated by 205 nucleotides ECD_00218 and ECD_00219 overlap by 30 nucleotides
ECD_00216: ECD_00216 - acyl coenzyme A dehydrogenase, at 245,433 to 247,877
_00216
ECD_00217: ECD_00217 - D-sedoheptulose 7-phosphate isomerase, at 248,117 to 248,695
_00217
ECD_00218: ECD_00218 - type 2 glutamine amidotransferase family protein, at 248,901 to 249,668
_00218
ECD_00219: ECD_00219 - L,D-transpeptidase-related protein, at 249,639 to 250,379
_00219
Position (kb) 248
249 Strain fitness (log2 ratio) -1
0
1
2 at 247.257 kb on + strand, within ECD_00216 at 247.334 kb on + strand, within ECD_00216 at 247.337 kb on - strand, within ECD_00216 at 247.361 kb on - strand, within ECD_00216 at 247.406 kb on - strand, within ECD_00216 at 247.534 kb on + strand, within ECD_00216 at 247.538 kb on + strand, within ECD_00216 at 247.538 kb on + strand, within ECD_00216 at 247.539 kb on - strand, within ECD_00216 at 247.539 kb on - strand, within ECD_00216 at 247.663 kb on - strand at 247.686 kb on - strand at 247.810 kb on - strand at 247.951 kb on - strand at 247.974 kb on - strand at 248.092 kb on + strand at 248.121 kb on - strand at 248.377 kb on + strand, within ECD_00217 at 248.776 kb on - strand at 248.968 kb on + strand at 248.968 kb on + strand at 248.968 kb on + strand at 248.996 kb on + strand, within ECD_00218 at 248.997 kb on - strand, within ECD_00218 at 249.021 kb on + strand, within ECD_00218 at 249.048 kb on - strand, within ECD_00218 at 249.068 kb on + strand, within ECD_00218 at 249.213 kb on + strand, within ECD_00218 at 249.213 kb on + strand, within ECD_00218 at 249.374 kb on + strand, within ECD_00218 at 249.442 kb on - strand, within ECD_00218 at 249.442 kb on - strand, within ECD_00218 at 249.446 kb on - strand, within ECD_00218 at 249.446 kb on - strand, within ECD_00218 at 249.446 kb on - strand, within ECD_00218 at 249.465 kb on - strand, within ECD_00218 at 249.661 kb on + strand at 249.662 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnA remove 247,257 + ECD_00216 0.75 +0.6 247,334 + ECD_00216 0.78 -0.2 247,337 - ECD_00216 0.78 -0.3 247,361 - ECD_00216 0.79 +0.5 247,406 - ECD_00216 0.81 +0.6 247,534 + ECD_00216 0.86 -0.2 247,538 + ECD_00216 0.86 -0.4 247,538 + ECD_00216 0.86 -0.0 247,539 - ECD_00216 0.86 -0.1 247,539 - ECD_00216 0.86 -0.2 247,663 - +0.4 247,686 - +0.7 247,810 - -0.0 247,951 - -0.6 247,974 - +0.8 248,092 + +0.5 248,121 - -0.3 248,377 + ECD_00217 0.45 -0.3 248,776 - -0.6 248,968 + +1.0 248,968 + +0.3 248,968 + -0.9 248,996 + ECD_00218 0.12 +0.2 248,997 - ECD_00218 0.12 +1.8 249,021 + ECD_00218 0.16 +0.6 249,048 - ECD_00218 0.19 +0.0 249,068 + ECD_00218 0.22 -0.2 249,213 + ECD_00218 0.41 +0.6 249,213 + ECD_00218 0.41 -0.0 249,374 + ECD_00218 0.62 +1.8 249,442 - ECD_00218 0.70 +0.1 249,442 - ECD_00218 0.70 +0.7 249,446 - ECD_00218 0.71 +0.9 249,446 - ECD_00218 0.71 -0.1 249,446 - ECD_00218 0.71 +0.9 249,465 - ECD_00218 0.73 +0.3 249,661 + -0.7 249,662 - +1.2
Or see this region's nucleotide sequence