Strain Fitness in Escherichia coli BL21 around ECD_00065

Experiment: Control_TnA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00064 and ECD_00065 are separated by 10 nucleotidesECD_00065 and ECD_00066 are separated by 338 nucleotides ECD_00064: ECD_00064 - L-arabinose isomerase, at 69,640 to 71,142 _00064 ECD_00065: ECD_00065 - L-ribulokinase, at 71,153 to 72,853 _00065 ECD_00066: ECD_00066 - ara regulon transcriptional activator; autorepressor, at 73,192 to 74,070 _00066 Position (kb) 71 72 73Strain fitness (log2 ratio) -2 -1 0 1at 70.265 kb on - strand, within ECD_00064at 70.434 kb on - strand, within ECD_00064at 70.446 kb on - strand, within ECD_00064at 70.521 kb on + strand, within ECD_00064at 70.521 kb on + strand, within ECD_00064at 70.522 kb on - strand, within ECD_00064at 70.561 kb on - strand, within ECD_00064at 70.726 kb on - strand, within ECD_00064at 70.726 kb on - strand, within ECD_00064at 70.782 kb on + strand, within ECD_00064at 70.797 kb on + strand, within ECD_00064at 70.937 kb on + strand, within ECD_00064at 70.956 kb on + strand, within ECD_00064at 71.038 kb on - strandat 71.038 kb on - strandat 71.087 kb on + strandat 71.123 kb on + strandat 71.155 kb on - strandat 71.156 kb on + strandat 71.156 kb on + strandat 71.157 kb on - strandat 71.157 kb on - strandat 71.157 kb on - strandat 71.157 kb on - strandat 71.157 kb on - strandat 71.205 kb on + strandat 71.206 kb on - strandat 71.239 kb on - strandat 71.612 kb on - strand, within ECD_00065at 71.829 kb on + strand, within ECD_00065at 71.830 kb on - strand, within ECD_00065at 71.830 kb on - strand, within ECD_00065at 71.909 kb on - strand, within ECD_00065at 71.909 kb on - strand, within ECD_00065at 71.971 kb on + strand, within ECD_00065at 71.971 kb on + strand, within ECD_00065at 71.971 kb on + strand, within ECD_00065at 71.995 kb on + strand, within ECD_00065at 72.098 kb on + strand, within ECD_00065at 72.098 kb on + strand, within ECD_00065at 72.098 kb on + strand, within ECD_00065at 72.235 kb on + strand, within ECD_00065at 72.403 kb on - strand, within ECD_00065at 72.418 kb on - strand, within ECD_00065at 72.761 kb on + strandat 72.983 kb on - strandat 73.011 kb on - strandat 73.073 kb on + strandat 73.073 kb on + strandat 73.073 kb on + strandat 73.073 kb on + strandat 73.324 kb on + strand, within ECD_00066at 73.324 kb on + strand, within ECD_00066at 73.326 kb on + strand, within ECD_00066at 73.326 kb on + strand, within ECD_00066at 73.326 kb on + strand, within ECD_00066at 73.326 kb on + strand, within ECD_00066at 73.401 kb on + strand, within ECD_00066at 73.402 kb on - strand, within ECD_00066at 73.480 kb on + strand, within ECD_00066at 73.480 kb on + strand, within ECD_00066at 73.529 kb on + strand, within ECD_00066at 73.744 kb on + strand, within ECD_00066at 73.744 kb on + strand, within ECD_00066

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnA
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70,265 - ECD_00064 0.42 +0.4
70,434 - ECD_00064 0.53 +0.1
70,446 - ECD_00064 0.54 +0.5
70,521 + ECD_00064 0.59 +0.7
70,521 + ECD_00064 0.59 +0.2
70,522 - ECD_00064 0.59 -0.3
70,561 - ECD_00064 0.61 +0.1
70,726 - ECD_00064 0.72 -0.3
70,726 - ECD_00064 0.72 -0.5
70,782 + ECD_00064 0.76 -0.1
70,797 + ECD_00064 0.77 -0.4
70,937 + ECD_00064 0.86 +0.2
70,956 + ECD_00064 0.88 -2.0
71,038 - +0.6
71,038 - +0.1
71,087 + +0.0
71,123 + +0.1
71,155 - +0.7
71,156 + -0.1
71,156 + -0.2
71,157 - -0.0
71,157 - +1.5
71,157 - +0.0
71,157 - -0.5
71,157 - +0.0
71,205 + +0.7
71,206 - -1.7
71,239 - -0.5
71,612 - ECD_00065 0.27 +0.6
71,829 + ECD_00065 0.40 -1.3
71,830 - ECD_00065 0.40 +0.1
71,830 - ECD_00065 0.40 +0.7
71,909 - ECD_00065 0.44 -0.2
71,909 - ECD_00065 0.44 -0.4
71,971 + ECD_00065 0.48 +1.0
71,971 + ECD_00065 0.48 -0.2
71,971 + ECD_00065 0.48 +0.5
71,995 + ECD_00065 0.50 +0.1
72,098 + ECD_00065 0.56 +0.5
72,098 + ECD_00065 0.56 +0.6
72,098 + ECD_00065 0.56 +0.3
72,235 + ECD_00065 0.64 +1.7
72,403 - ECD_00065 0.73 -0.8
72,418 - ECD_00065 0.74 -0.8
72,761 + -0.9
72,983 - +0.8
73,011 - -0.3
73,073 + -0.5
73,073 + -0.4
73,073 + +0.8
73,073 + -0.8
73,324 + ECD_00066 0.15 +0.9
73,324 + ECD_00066 0.15 +0.4
73,326 + ECD_00066 0.15 -0.7
73,326 + ECD_00066 0.15 -0.3
73,326 + ECD_00066 0.15 +0.9
73,326 + ECD_00066 0.15 +0.6
73,401 + ECD_00066 0.24 +0.3
73,402 - ECD_00066 0.24 -0.3
73,480 + ECD_00066 0.33 -0.0
73,480 + ECD_00066 0.33 +0.0
73,529 + ECD_00066 0.38 -0.1
73,744 + ECD_00066 0.63 -1.2
73,744 + ECD_00066 0.63 -0.7

Or see this region's nucleotide sequence