Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dusA and LU632_RS23770 are separated by 91 nucleotides LU632_RS23770 and LU632_RS23775 overlap by 15 nucleotides LU632_RS23775 and LU632_RS23780 are separated by 173 nucleotides
LU632_RS23765: dusA - tRNA dihydrouridine(20/20a) synthase DusA, at 4,535,400 to 4,536,449
dusA
LU632_RS23770: LU632_RS23770 - integrase, at 4,536,541 to 4,536,936
_RS23770
LU632_RS23775: LU632_RS23775 - phage tail protein, at 4,536,922 to 4,537,458
_RS23775
LU632_RS23780: LU632_RS23780 - IS481 family transposase, at 4,537,632 to 4,538,672
_RS23780
Position (kb) 4536
4537 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4535.596 kb on + strand, within dusA at 4535.596 kb on + strand, within dusA at 4535.596 kb on + strand, within dusA at 4535.597 kb on - strand, within dusA at 4535.597 kb on - strand, within dusA at 4535.652 kb on - strand, within dusA at 4535.652 kb on - strand, within dusA at 4535.734 kb on - strand, within dusA at 4535.787 kb on + strand, within dusA at 4535.787 kb on + strand, within dusA at 4535.788 kb on - strand, within dusA at 4535.788 kb on - strand, within dusA at 4535.788 kb on - strand, within dusA at 4535.885 kb on + strand, within dusA at 4535.900 kb on + strand, within dusA at 4535.900 kb on + strand, within dusA at 4535.900 kb on + strand, within dusA at 4535.900 kb on + strand, within dusA at 4535.901 kb on - strand, within dusA at 4535.901 kb on - strand, within dusA at 4535.901 kb on - strand, within dusA at 4535.901 kb on - strand, within dusA at 4535.901 kb on - strand, within dusA at 4536.032 kb on + strand, within dusA at 4536.033 kb on - strand, within dusA at 4536.134 kb on + strand, within dusA at 4536.134 kb on + strand, within dusA at 4536.134 kb on + strand, within dusA at 4536.135 kb on - strand, within dusA at 4536.135 kb on - strand, within dusA at 4536.239 kb on - strand, within dusA at 4536.286 kb on + strand, within dusA at 4536.287 kb on - strand, within dusA at 4536.540 kb on + strand at 4536.541 kb on - strand at 4536.547 kb on + strand at 4536.550 kb on + strand at 4536.550 kb on + strand at 4536.551 kb on - strand at 4536.552 kb on + strand at 4536.553 kb on - strand at 4536.553 kb on - strand at 4536.557 kb on + strand at 4536.557 kb on + strand at 4536.558 kb on - strand at 4536.561 kb on - strand at 4536.587 kb on + strand, within LU632_RS23770 at 4536.633 kb on - strand, within LU632_RS23770 at 4536.633 kb on - strand, within LU632_RS23770 at 4536.765 kb on - strand, within LU632_RS23770 at 4536.773 kb on - strand, within LU632_RS23770 at 4536.775 kb on - strand, within LU632_RS23770 at 4536.775 kb on - strand, within LU632_RS23770 at 4536.775 kb on - strand, within LU632_RS23770 at 4536.821 kb on - strand, within LU632_RS23770 at 4536.821 kb on - strand, within LU632_RS23770 at 4536.821 kb on - strand, within LU632_RS23770 at 4536.821 kb on - strand, within LU632_RS23770 at 4536.851 kb on + strand, within LU632_RS23770 at 4536.851 kb on + strand, within LU632_RS23770 at 4536.852 kb on - strand, within LU632_RS23770 at 4536.863 kb on + strand, within LU632_RS23770 at 4536.863 kb on + strand, within LU632_RS23770 at 4536.868 kb on - strand, within LU632_RS23770 at 4536.957 kb on + strand at 4536.959 kb on + strand at 4536.959 kb on + strand at 4536.960 kb on - strand at 4537.070 kb on + strand, within LU632_RS23775 at 4537.071 kb on - strand, within LU632_RS23775 at 4537.144 kb on - strand, within LU632_RS23775 at 4537.144 kb on - strand, within LU632_RS23775 at 4537.153 kb on + strand, within LU632_RS23775 at 4537.276 kb on - strand, within LU632_RS23775 at 4537.406 kb on - strand at 4537.484 kb on + strand at 4537.484 kb on + strand at 4537.484 kb on + strand at 4537.484 kb on + strand at 4537.485 kb on - strand at 4537.485 kb on - strand at 4537.485 kb on - strand at 4537.486 kb on + strand at 4537.526 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 4,535,596 + dusA LU632_RS23765 0.19 -0.3 4,535,596 + dusA LU632_RS23765 0.19 -0.9 4,535,596 + dusA LU632_RS23765 0.19 -1.3 4,535,597 - dusA LU632_RS23765 0.19 -1.0 4,535,597 - dusA LU632_RS23765 0.19 +0.1 4,535,652 - dusA LU632_RS23765 0.24 +2.3 4,535,652 - dusA LU632_RS23765 0.24 +0.1 4,535,734 - dusA LU632_RS23765 0.32 -0.4 4,535,787 + dusA LU632_RS23765 0.37 -0.3 4,535,787 + dusA LU632_RS23765 0.37 +0.2 4,535,788 - dusA LU632_RS23765 0.37 +0.3 4,535,788 - dusA LU632_RS23765 0.37 +0.6 4,535,788 - dusA LU632_RS23765 0.37 -1.0 4,535,885 + dusA LU632_RS23765 0.46 -0.5 4,535,900 + dusA LU632_RS23765 0.48 -0.5 4,535,900 + dusA LU632_RS23765 0.48 +0.2 4,535,900 + dusA LU632_RS23765 0.48 -0.3 4,535,900 + dusA LU632_RS23765 0.48 -0.4 4,535,901 - dusA LU632_RS23765 0.48 +0.9 4,535,901 - dusA LU632_RS23765 0.48 -1.1 4,535,901 - dusA LU632_RS23765 0.48 -1.5 4,535,901 - dusA LU632_RS23765 0.48 -0.4 4,535,901 - dusA LU632_RS23765 0.48 -0.3 4,536,032 + dusA LU632_RS23765 0.60 -0.5 4,536,033 - dusA LU632_RS23765 0.60 +0.8 4,536,134 + dusA LU632_RS23765 0.70 +1.1 4,536,134 + dusA LU632_RS23765 0.70 -0.2 4,536,134 + dusA LU632_RS23765 0.70 +0.7 4,536,135 - dusA LU632_RS23765 0.70 +2.3 4,536,135 - dusA LU632_RS23765 0.70 -2.0 4,536,239 - dusA LU632_RS23765 0.80 -0.5 4,536,286 + dusA LU632_RS23765 0.84 -1.9 4,536,287 - dusA LU632_RS23765 0.84 -0.7 4,536,540 + -0.7 4,536,541 - +0.0 4,536,547 + -0.9 4,536,550 + -0.0 4,536,550 + +0.7 4,536,551 - +0.4 4,536,552 + -0.4 4,536,553 - +0.9 4,536,553 - -0.4 4,536,557 + +0.2 4,536,557 + -0.5 4,536,558 - +0.1 4,536,561 - +0.4 4,536,587 + LU632_RS23770 0.12 +0.3 4,536,633 - LU632_RS23770 0.23 +1.1 4,536,633 - LU632_RS23770 0.23 -0.7 4,536,765 - LU632_RS23770 0.57 +0.1 4,536,773 - LU632_RS23770 0.59 -0.2 4,536,775 - LU632_RS23770 0.59 +0.1 4,536,775 - LU632_RS23770 0.59 -0.5 4,536,775 - LU632_RS23770 0.59 +0.6 4,536,821 - LU632_RS23770 0.71 -1.5 4,536,821 - LU632_RS23770 0.71 -0.2 4,536,821 - LU632_RS23770 0.71 -0.5 4,536,821 - LU632_RS23770 0.71 +0.1 4,536,851 + LU632_RS23770 0.78 +0.6 4,536,851 + LU632_RS23770 0.78 -0.1 4,536,852 - LU632_RS23770 0.79 +0.8 4,536,863 + LU632_RS23770 0.81 -0.3 4,536,863 + LU632_RS23770 0.81 +0.4 4,536,868 - LU632_RS23770 0.83 -0.3 4,536,957 + -0.9 4,536,959 + -0.1 4,536,959 + -0.4 4,536,960 - +0.6 4,537,070 + LU632_RS23775 0.28 -0.4 4,537,071 - LU632_RS23775 0.28 -0.4 4,537,144 - LU632_RS23775 0.41 +0.2 4,537,144 - LU632_RS23775 0.41 -0.2 4,537,153 + LU632_RS23775 0.43 -0.0 4,537,276 - LU632_RS23775 0.66 -0.4 4,537,406 - +0.0 4,537,484 + -0.7 4,537,484 + -0.1 4,537,484 + +0.8 4,537,484 + +0.1 4,537,485 - -0.3 4,537,485 - -0.4 4,537,485 - +0.4 4,537,486 + +0.3 4,537,526 - -0.0
Or see this region's nucleotide sequence