Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ompR and LU632_RS22945 are separated by 72 nucleotides LU632_RS22945 and greB are separated by 14 nucleotides greB and LU632_RS22955 are separated by 93 nucleotides
LU632_RS22940: ompR - two-component system response regulator OmpR, at 4,370,882 to 4,371,601
ompR
LU632_RS22945: LU632_RS22945 - hypothetical protein, at 4,371,674 to 4,371,889
_RS22945
LU632_RS22950: greB - transcription elongation factor GreB, at 4,371,904 to 4,372,383
greB
LU632_RS22955: LU632_RS22955 - RNA-binding transcriptional accessory protein, at 4,372,477 to 4,374,795
_RS22955
Position (kb) 4371
4372
4373 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4370.940 kb on + strand at 4370.941 kb on - strand at 4371.021 kb on + strand, within ompR at 4371.022 kb on - strand, within ompR at 4371.178 kb on + strand, within ompR at 4371.295 kb on + strand, within ompR at 4371.295 kb on + strand, within ompR at 4371.295 kb on - strand, within ompR at 4371.297 kb on + strand, within ompR at 4371.297 kb on + strand, within ompR at 4371.298 kb on - strand, within ompR at 4371.362 kb on - strand, within ompR at 4371.365 kb on + strand, within ompR at 4371.406 kb on + strand, within ompR at 4371.407 kb on - strand, within ompR at 4371.407 kb on - strand, within ompR at 4371.410 kb on + strand, within ompR at 4371.662 kb on + strand at 4371.662 kb on + strand at 4371.680 kb on + strand at 4371.682 kb on + strand at 4371.682 kb on + strand at 4371.682 kb on + strand at 4371.682 kb on + strand at 4371.683 kb on - strand at 4371.747 kb on + strand, within LU632_RS22945 at 4371.878 kb on - strand at 4371.913 kb on - strand at 4372.046 kb on - strand, within greB at 4372.051 kb on + strand, within greB at 4372.051 kb on + strand, within greB at 4372.052 kb on - strand, within greB at 4372.052 kb on - strand, within greB at 4372.093 kb on + strand, within greB at 4372.094 kb on - strand, within greB at 4372.132 kb on + strand, within greB at 4372.246 kb on - strand, within greB at 4372.252 kb on + strand, within greB at 4372.252 kb on + strand, within greB at 4372.252 kb on + strand, within greB at 4372.310 kb on + strand, within greB at 4372.310 kb on + strand, within greB at 4372.310 kb on + strand, within greB at 4372.311 kb on - strand, within greB at 4372.311 kb on - strand, within greB at 4372.311 kb on - strand, within greB at 4372.311 kb on - strand, within greB at 4372.311 kb on - strand, within greB at 4372.311 kb on - strand, within greB at 4372.323 kb on + strand, within greB at 4372.348 kb on + strand at 4372.349 kb on - strand at 4372.392 kb on + strand at 4372.393 kb on - strand at 4372.443 kb on + strand at 4372.443 kb on + strand at 4372.444 kb on - strand at 4372.444 kb on - strand at 4372.444 kb on - strand at 4372.471 kb on + strand at 4372.471 kb on + strand at 4372.504 kb on - strand at 4372.599 kb on + strand at 4372.755 kb on + strand, within LU632_RS22955 at 4372.786 kb on + strand, within LU632_RS22955 at 4372.786 kb on + strand, within LU632_RS22955 at 4372.786 kb on + strand, within LU632_RS22955 at 4372.786 kb on + strand, within LU632_RS22955 at 4372.786 kb on + strand, within LU632_RS22955 at 4372.787 kb on - strand, within LU632_RS22955 at 4372.787 kb on - strand, within LU632_RS22955 at 4372.787 kb on - strand, within LU632_RS22955 at 4372.804 kb on - strand, within LU632_RS22955 at 4372.909 kb on + strand, within LU632_RS22955 at 4372.909 kb on + strand, within LU632_RS22955 at 4372.909 kb on + strand, within LU632_RS22955 at 4372.910 kb on - strand, within LU632_RS22955 at 4373.099 kb on - strand, within LU632_RS22955 at 4373.103 kb on + strand, within LU632_RS22955 at 4373.262 kb on + strand, within LU632_RS22955 at 4373.301 kb on + strand, within LU632_RS22955 at 4373.302 kb on - strand, within LU632_RS22955
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 4,370,940 + -1.0 4,370,941 - +0.3 4,371,021 + ompR LU632_RS22940 0.19 -0.3 4,371,022 - ompR LU632_RS22940 0.19 -0.5 4,371,178 + ompR LU632_RS22940 0.41 -0.6 4,371,295 + ompR LU632_RS22940 0.57 -0.1 4,371,295 + ompR LU632_RS22940 0.57 +0.4 4,371,295 - ompR LU632_RS22940 0.57 -0.7 4,371,297 + ompR LU632_RS22940 0.58 +0.3 4,371,297 + ompR LU632_RS22940 0.58 -0.2 4,371,298 - ompR LU632_RS22940 0.58 -2.1 4,371,362 - ompR LU632_RS22940 0.67 -1.4 4,371,365 + ompR LU632_RS22940 0.67 -0.6 4,371,406 + ompR LU632_RS22940 0.73 -1.8 4,371,407 - ompR LU632_RS22940 0.73 +2.0 4,371,407 - ompR LU632_RS22940 0.73 -0.3 4,371,410 + ompR LU632_RS22940 0.73 -0.4 4,371,662 + -1.3 4,371,662 + +0.3 4,371,680 + +0.3 4,371,682 + -0.5 4,371,682 + -0.0 4,371,682 + +0.8 4,371,682 + -0.5 4,371,683 - -0.9 4,371,747 + LU632_RS22945 0.34 +0.4 4,371,878 - +0.0 4,371,913 - -0.6 4,372,046 - greB LU632_RS22950 0.30 -0.2 4,372,051 + greB LU632_RS22950 0.31 -0.5 4,372,051 + greB LU632_RS22950 0.31 -0.2 4,372,052 - greB LU632_RS22950 0.31 -0.3 4,372,052 - greB LU632_RS22950 0.31 -0.0 4,372,093 + greB LU632_RS22950 0.39 -1.3 4,372,094 - greB LU632_RS22950 0.40 +0.0 4,372,132 + greB LU632_RS22950 0.47 -0.1 4,372,246 - greB LU632_RS22950 0.71 +0.3 4,372,252 + greB LU632_RS22950 0.72 -0.7 4,372,252 + greB LU632_RS22950 0.72 +1.0 4,372,252 + greB LU632_RS22950 0.72 -1.3 4,372,310 + greB LU632_RS22950 0.85 -0.1 4,372,310 + greB LU632_RS22950 0.85 -0.2 4,372,310 + greB LU632_RS22950 0.85 +0.8 4,372,311 - greB LU632_RS22950 0.85 -0.1 4,372,311 - greB LU632_RS22950 0.85 -0.2 4,372,311 - greB LU632_RS22950 0.85 -0.2 4,372,311 - greB LU632_RS22950 0.85 -0.4 4,372,311 - greB LU632_RS22950 0.85 -1.1 4,372,311 - greB LU632_RS22950 0.85 -0.7 4,372,323 + greB LU632_RS22950 0.87 -0.0 4,372,348 + -0.1 4,372,349 - -0.2 4,372,392 + -0.3 4,372,393 - +0.1 4,372,443 + +0.1 4,372,443 + +0.3 4,372,444 - -0.2 4,372,444 - +0.2 4,372,444 - -0.3 4,372,471 + -0.3 4,372,471 + -0.7 4,372,504 - -0.3 4,372,599 + -0.4 4,372,755 + LU632_RS22955 0.12 -0.5 4,372,786 + LU632_RS22955 0.13 -0.6 4,372,786 + LU632_RS22955 0.13 -0.7 4,372,786 + LU632_RS22955 0.13 +1.5 4,372,786 + LU632_RS22955 0.13 -0.3 4,372,786 + LU632_RS22955 0.13 -0.9 4,372,787 - LU632_RS22955 0.13 -0.1 4,372,787 - LU632_RS22955 0.13 -1.2 4,372,787 - LU632_RS22955 0.13 -1.4 4,372,804 - LU632_RS22955 0.14 -0.5 4,372,909 + LU632_RS22955 0.19 +0.6 4,372,909 + LU632_RS22955 0.19 +0.7 4,372,909 + LU632_RS22955 0.19 -1.5 4,372,910 - LU632_RS22955 0.19 -0.0 4,373,099 - LU632_RS22955 0.27 -0.3 4,373,103 + LU632_RS22955 0.27 -0.7 4,373,262 + LU632_RS22955 0.34 -0.3 4,373,301 + LU632_RS22955 0.36 -1.7 4,373,302 - LU632_RS22955 0.36 +0.7
Or see this region's nucleotide sequence