Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22435 and LU632_RS22440 overlap by 25 nucleotides LU632_RS22440 and aroE overlap by 4 nucleotides aroE and tsaC are separated by 5 nucleotides
LU632_RS22435: LU632_RS22435 - gamma carbonic anhydrase family protein, at 4,289,282 to 4,289,836
_RS22435
LU632_RS22440: LU632_RS22440 - DUF1488 domain-containing protein, at 4,289,812 to 4,290,063
_RS22440
LU632_RS22445: aroE - shikimate dehydrogenase, at 4,290,060 to 4,290,881
aroE
LU632_RS22450: tsaC - L-threonylcarbamoyladenylate synthase type 1 TsaC, at 4,290,887 to 4,291,459
tsaC
Position (kb) 4289
4290
4291 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4289.168 kb on - strand at 4289.215 kb on + strand at 4289.215 kb on + strand at 4289.262 kb on + strand at 4289.266 kb on + strand at 4289.296 kb on - strand at 4289.407 kb on - strand, within LU632_RS22435 at 4289.437 kb on + strand, within LU632_RS22435 at 4289.437 kb on + strand, within LU632_RS22435 at 4289.475 kb on + strand, within LU632_RS22435 at 4289.475 kb on + strand, within LU632_RS22435 at 4289.476 kb on - strand, within LU632_RS22435 at 4289.476 kb on - strand, within LU632_RS22435 at 4289.485 kb on - strand, within LU632_RS22435 at 4289.554 kb on + strand, within LU632_RS22435 at 4289.554 kb on + strand, within LU632_RS22435 at 4289.554 kb on + strand, within LU632_RS22435 at 4289.554 kb on + strand, within LU632_RS22435 at 4289.555 kb on - strand, within LU632_RS22435 at 4289.555 kb on - strand, within LU632_RS22435 at 4289.555 kb on - strand, within LU632_RS22435 at 4289.555 kb on - strand, within LU632_RS22435 at 4289.555 kb on - strand, within LU632_RS22435 at 4289.705 kb on + strand, within LU632_RS22435 at 4289.706 kb on - strand, within LU632_RS22435 at 4289.709 kb on + strand, within LU632_RS22435 at 4289.755 kb on + strand, within LU632_RS22435 at 4289.756 kb on - strand, within LU632_RS22435 at 4289.783 kb on + strand at 4289.923 kb on - strand, within LU632_RS22440 at 4289.945 kb on - strand, within LU632_RS22440 at 4289.945 kb on - strand, within LU632_RS22440 at 4289.947 kb on - strand, within LU632_RS22440 at 4289.961 kb on + strand, within LU632_RS22440 at 4289.961 kb on + strand, within LU632_RS22440 at 4290.178 kb on - strand, within aroE at 4290.263 kb on - strand, within aroE at 4290.266 kb on + strand, within aroE at 4290.270 kb on + strand, within aroE at 4290.437 kb on + strand, within aroE at 4290.438 kb on - strand, within aroE at 4290.475 kb on - strand, within aroE at 4290.620 kb on + strand, within aroE at 4290.686 kb on + strand, within aroE at 4290.728 kb on + strand, within aroE at 4290.822 kb on + strand at 4290.822 kb on + strand at 4290.823 kb on - strand at 4290.823 kb on - strand at 4290.823 kb on - strand at 4290.825 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 4,289,168 - +0.3 4,289,215 + +0.4 4,289,215 + -0.3 4,289,262 + -1.2 4,289,266 + +1.1 4,289,296 - +0.1 4,289,407 - LU632_RS22435 0.23 -0.0 4,289,437 + LU632_RS22435 0.28 -0.2 4,289,437 + LU632_RS22435 0.28 -0.7 4,289,475 + LU632_RS22435 0.35 +1.8 4,289,475 + LU632_RS22435 0.35 -0.8 4,289,476 - LU632_RS22435 0.35 +0.3 4,289,476 - LU632_RS22435 0.35 +0.5 4,289,485 - LU632_RS22435 0.37 +0.3 4,289,554 + LU632_RS22435 0.49 +0.7 4,289,554 + LU632_RS22435 0.49 -0.7 4,289,554 + LU632_RS22435 0.49 +0.4 4,289,554 + LU632_RS22435 0.49 -0.0 4,289,555 - LU632_RS22435 0.49 -0.3 4,289,555 - LU632_RS22435 0.49 -0.4 4,289,555 - LU632_RS22435 0.49 +0.0 4,289,555 - LU632_RS22435 0.49 +0.2 4,289,555 - LU632_RS22435 0.49 -1.9 4,289,705 + LU632_RS22435 0.76 -0.0 4,289,706 - LU632_RS22435 0.76 -0.7 4,289,709 + LU632_RS22435 0.77 -0.5 4,289,755 + LU632_RS22435 0.85 -0.6 4,289,756 - LU632_RS22435 0.85 -0.3 4,289,783 + -1.7 4,289,923 - LU632_RS22440 0.44 +0.9 4,289,945 - LU632_RS22440 0.53 +0.3 4,289,945 - LU632_RS22440 0.53 -0.2 4,289,947 - LU632_RS22440 0.54 -2.5 4,289,961 + LU632_RS22440 0.59 -0.4 4,289,961 + LU632_RS22440 0.59 +0.1 4,290,178 - aroE LU632_RS22445 0.14 -1.3 4,290,263 - aroE LU632_RS22445 0.25 -1.1 4,290,266 + aroE LU632_RS22445 0.25 +1.3 4,290,270 + aroE LU632_RS22445 0.26 -2.1 4,290,437 + aroE LU632_RS22445 0.46 -0.7 4,290,438 - aroE LU632_RS22445 0.46 -1.7 4,290,475 - aroE LU632_RS22445 0.50 -0.7 4,290,620 + aroE LU632_RS22445 0.68 +1.3 4,290,686 + aroE LU632_RS22445 0.76 -2.4 4,290,728 + aroE LU632_RS22445 0.81 +0.3 4,290,822 + -1.3 4,290,822 + +1.3 4,290,823 - -0.3 4,290,823 - -1.7 4,290,823 - -1.1 4,290,825 - +1.3
Or see this region's nucleotide sequence