Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS21945 and rfaQ are separated by 527 nucleotides rfaQ and LU632_RS21955 overlap by 8 nucleotides
LU632_RS21945: LU632_RS21945 - glycosyltransferase family 9 protein, at 4,192,507 to 4,193,376
_RS21945
LU632_RS21950: rfaQ - putative lipopolysaccharide heptosyltransferase III, at 4,193,904 to 4,194,995
rfaQ
LU632_RS21955: LU632_RS21955 - glycosyltransferase family 4 protein, at 4,194,988 to 4,196,121
_RS21955
Position (kb) 4193
4194
4195 Strain fitness (log2 ratio) -1
0
1
2 at 4192.969 kb on + strand, within LU632_RS21945 at 4193.231 kb on - strand, within LU632_RS21945 at 4193.237 kb on + strand, within LU632_RS21945 at 4193.306 kb on + strand at 4193.307 kb on - strand at 4193.311 kb on - strand at 4193.311 kb on - strand at 4193.311 kb on - strand at 4193.311 kb on - strand at 4193.323 kb on + strand at 4193.323 kb on + strand at 4193.324 kb on - strand at 4193.324 kb on - strand at 4193.351 kb on - strand at 4193.352 kb on + strand at 4193.353 kb on - strand at 4193.377 kb on + strand at 4193.377 kb on + strand at 4193.378 kb on - strand at 4193.378 kb on - strand at 4193.378 kb on - strand at 4193.379 kb on + strand at 4193.379 kb on + strand at 4193.380 kb on - strand at 4193.445 kb on - strand at 4193.445 kb on - strand at 4193.446 kb on + strand at 4193.447 kb on - strand at 4193.540 kb on + strand at 4193.552 kb on + strand at 4193.656 kb on + strand at 4193.656 kb on + strand at 4193.656 kb on + strand at 4193.677 kb on + strand at 4193.693 kb on - strand at 4193.693 kb on - strand at 4193.694 kb on + strand at 4193.694 kb on + strand at 4193.695 kb on - strand at 4193.699 kb on - strand at 4193.778 kb on + strand at 4193.808 kb on + strand at 4193.809 kb on - strand at 4193.809 kb on - strand at 4193.809 kb on - strand at 4193.809 kb on - strand at 4193.820 kb on - strand at 4193.831 kb on + strand at 4193.859 kb on + strand at 4193.875 kb on - strand at 4193.902 kb on + strand at 4193.903 kb on - strand at 4193.951 kb on + strand at 4193.951 kb on + strand at 4193.952 kb on - strand at 4194.060 kb on + strand, within rfaQ at 4194.062 kb on + strand, within rfaQ at 4194.156 kb on - strand, within rfaQ at 4194.201 kb on + strand, within rfaQ at 4194.304 kb on + strand, within rfaQ at 4194.365 kb on + strand, within rfaQ at 4194.370 kb on + strand, within rfaQ at 4194.438 kb on + strand, within rfaQ at 4194.488 kb on + strand, within rfaQ at 4194.488 kb on + strand, within rfaQ at 4194.488 kb on + strand, within rfaQ at 4194.488 kb on + strand, within rfaQ at 4194.488 kb on + strand, within rfaQ at 4194.489 kb on - strand, within rfaQ at 4194.489 kb on - strand, within rfaQ at 4194.489 kb on - strand, within rfaQ at 4194.506 kb on + strand, within rfaQ at 4194.555 kb on - strand, within rfaQ at 4194.790 kb on + strand, within rfaQ at 4194.882 kb on + strand, within rfaQ at 4195.053 kb on + strand at 4195.264 kb on - strand, within LU632_RS21955 at 4195.615 kb on + strand, within LU632_RS21955 at 4195.616 kb on - strand, within LU632_RS21955
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 4,192,969 + LU632_RS21945 0.53 -0.3 4,193,231 - LU632_RS21945 0.83 +0.8 4,193,237 + LU632_RS21945 0.84 +0.3 4,193,306 + +0.8 4,193,307 - +0.0 4,193,311 - -0.3 4,193,311 - -0.4 4,193,311 - +0.1 4,193,311 - -0.0 4,193,323 + -0.5 4,193,323 + -0.2 4,193,324 - -1.3 4,193,324 - -0.1 4,193,351 - -1.6 4,193,352 + -0.7 4,193,353 - +0.8 4,193,377 + +0.4 4,193,377 + +0.6 4,193,378 - -0.3 4,193,378 - -0.4 4,193,378 - -0.5 4,193,379 + -0.2 4,193,379 + -0.4 4,193,380 - +0.3 4,193,445 - +0.0 4,193,445 - +0.2 4,193,446 + -0.7 4,193,447 - -0.8 4,193,540 + -0.2 4,193,552 + -0.1 4,193,656 + -0.3 4,193,656 + -1.3 4,193,656 + -0.5 4,193,677 + -0.6 4,193,693 - +0.7 4,193,693 - +0.1 4,193,694 + -0.4 4,193,694 + +0.3 4,193,695 - +0.6 4,193,699 - +0.7 4,193,778 + -0.7 4,193,808 + +0.3 4,193,809 - +0.3 4,193,809 - -1.1 4,193,809 - +1.0 4,193,809 - +0.3 4,193,820 - +0.7 4,193,831 + -0.2 4,193,859 + -0.5 4,193,875 - +0.4 4,193,902 + +1.8 4,193,903 - -0.7 4,193,951 + -0.6 4,193,951 + +1.2 4,193,952 - -1.1 4,194,060 + rfaQ LU632_RS21950 0.14 -0.3 4,194,062 + rfaQ LU632_RS21950 0.14 -0.4 4,194,156 - rfaQ LU632_RS21950 0.23 +0.3 4,194,201 + rfaQ LU632_RS21950 0.27 -0.3 4,194,304 + rfaQ LU632_RS21950 0.37 -0.4 4,194,365 + rfaQ LU632_RS21950 0.42 +0.4 4,194,370 + rfaQ LU632_RS21950 0.43 -0.3 4,194,438 + rfaQ LU632_RS21950 0.49 +0.0 4,194,488 + rfaQ LU632_RS21950 0.53 -0.6 4,194,488 + rfaQ LU632_RS21950 0.53 +0.3 4,194,488 + rfaQ LU632_RS21950 0.53 +0.3 4,194,488 + rfaQ LU632_RS21950 0.53 +0.5 4,194,488 + rfaQ LU632_RS21950 0.53 -0.1 4,194,489 - rfaQ LU632_RS21950 0.54 +1.3 4,194,489 - rfaQ LU632_RS21950 0.54 -0.6 4,194,489 - rfaQ LU632_RS21950 0.54 -1.3 4,194,506 + rfaQ LU632_RS21950 0.55 +1.3 4,194,555 - rfaQ LU632_RS21950 0.60 +0.1 4,194,790 + rfaQ LU632_RS21950 0.81 +0.7 4,194,882 + rfaQ LU632_RS21950 0.90 +0.6 4,195,053 + +0.7 4,195,264 - LU632_RS21955 0.24 -1.1 4,195,615 + LU632_RS21955 0.55 -1.7 4,195,616 - LU632_RS21955 0.55 -0.3
Or see this region's nucleotide sequence