Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18940

Experiment: HBM-Sucrose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS18935 and LU632_RS18940 are separated by 81 nucleotidesLU632_RS18940 and LU632_RS18945 are separated by 15 nucleotidesLU632_RS18945 and LU632_RS18950 are separated by 24 nucleotides LU632_RS18935: LU632_RS18935 - exonuclease subunit SbcC, at 3,572,954 to 3,576,628 _RS18935 LU632_RS18940: LU632_RS18940 - DUF799 domain-containing protein, at 3,576,710 to 3,577,345 _RS18940 LU632_RS18945: LU632_RS18945 - DUF4810 domain-containing protein, at 3,577,361 to 3,577,671 _RS18945 LU632_RS18950: LU632_RS18950 - hypothetical protein, at 3,577,696 to 3,578,033 _RS18950 Position (kb) 3576 3577 3578Strain fitness (log2 ratio) -2 -1 0 1 2at 3575.817 kb on + strand, within LU632_RS18935at 3575.818 kb on - strand, within LU632_RS18935at 3576.146 kb on - strand, within LU632_RS18935at 3576.146 kb on - strand, within LU632_RS18935at 3576.241 kb on - strand, within LU632_RS18935at 3576.251 kb on + strand, within LU632_RS18935at 3576.252 kb on - strand, within LU632_RS18935at 3576.253 kb on + strand, within LU632_RS18935at 3576.254 kb on - strand, within LU632_RS18935at 3576.254 kb on - strand, within LU632_RS18935at 3576.302 kb on - strandat 3576.417 kb on + strandat 3576.518 kb on - strandat 3576.528 kb on + strandat 3576.528 kb on + strandat 3576.602 kb on - strandat 3576.659 kb on + strandat 3576.779 kb on - strand, within LU632_RS18940at 3576.864 kb on - strand, within LU632_RS18940at 3576.870 kb on - strand, within LU632_RS18940at 3576.897 kb on - strand, within LU632_RS18940at 3577.007 kb on + strand, within LU632_RS18940at 3577.008 kb on - strand, within LU632_RS18940at 3577.009 kb on + strand, within LU632_RS18940at 3577.009 kb on + strand, within LU632_RS18940at 3577.009 kb on + strand, within LU632_RS18940at 3577.009 kb on + strand, within LU632_RS18940at 3577.010 kb on - strand, within LU632_RS18940at 3577.010 kb on - strand, within LU632_RS18940at 3577.097 kb on + strand, within LU632_RS18940at 3577.132 kb on + strand, within LU632_RS18940at 3577.132 kb on + strand, within LU632_RS18940at 3577.132 kb on + strand, within LU632_RS18940at 3577.132 kb on + strand, within LU632_RS18940at 3577.132 kb on + strand, within LU632_RS18940at 3577.132 kb on + strand, within LU632_RS18940at 3577.132 kb on + strand, within LU632_RS18940at 3577.133 kb on - strand, within LU632_RS18940at 3577.133 kb on - strand, within LU632_RS18940at 3577.133 kb on - strand, within LU632_RS18940at 3577.133 kb on - strand, within LU632_RS18940at 3577.133 kb on - strand, within LU632_RS18940at 3577.133 kb on - strand, within LU632_RS18940at 3577.133 kb on - strand, within LU632_RS18940at 3577.133 kb on - strand, within LU632_RS18940at 3577.135 kb on + strand, within LU632_RS18940at 3577.135 kb on + strand, within LU632_RS18940at 3577.135 kb on + strand, within LU632_RS18940at 3577.135 kb on + strand, within LU632_RS18940at 3577.135 kb on + strand, within LU632_RS18940at 3577.135 kb on + strand, within LU632_RS18940at 3577.135 kb on + strand, within LU632_RS18940at 3577.136 kb on - strand, within LU632_RS18940at 3577.136 kb on - strand, within LU632_RS18940at 3577.136 kb on - strand, within LU632_RS18940at 3577.136 kb on - strand, within LU632_RS18940at 3577.137 kb on + strand, within LU632_RS18940at 3577.137 kb on + strand, within LU632_RS18940at 3577.137 kb on + strand, within LU632_RS18940at 3577.137 kb on + strand, within LU632_RS18940at 3577.138 kb on - strand, within LU632_RS18940at 3577.138 kb on - strand, within LU632_RS18940at 3577.138 kb on - strand, within LU632_RS18940at 3577.138 kb on - strand, within LU632_RS18940at 3577.138 kb on - strand, within LU632_RS18940at 3577.138 kb on - strand, within LU632_RS18940at 3577.362 kb on + strandat 3577.366 kb on + strandat 3577.464 kb on + strand, within LU632_RS18945at 3577.465 kb on - strand, within LU632_RS18945at 3577.465 kb on - strand, within LU632_RS18945at 3577.555 kb on - strand, within LU632_RS18945at 3577.561 kb on - strand, within LU632_RS18945at 3577.566 kb on - strand, within LU632_RS18945at 3577.571 kb on + strand, within LU632_RS18945at 3577.572 kb on - strand, within LU632_RS18945at 3577.697 kb on + strandat 3577.799 kb on + strand, within LU632_RS18950at 3577.799 kb on + strand, within LU632_RS18950at 3577.800 kb on - strand, within LU632_RS18950at 3577.836 kb on + strand, within LU632_RS18950at 3577.841 kb on - strand, within LU632_RS18950at 3577.841 kb on - strand, within LU632_RS18950at 3577.845 kb on + strand, within LU632_RS18950at 3577.846 kb on - strand, within LU632_RS18950at 3577.846 kb on - strand, within LU632_RS18950at 3577.846 kb on - strand, within LU632_RS18950at 3577.846 kb on - strand, within LU632_RS18950at 3577.846 kb on - strand, within LU632_RS18950at 3577.846 kb on - strand, within LU632_RS18950at 3577.846 kb on - strand, within LU632_RS18950at 3577.847 kb on + strand, within LU632_RS18950at 3577.847 kb on + strand, within LU632_RS18950at 3577.848 kb on - strand, within LU632_RS18950at 3577.848 kb on - strand, within LU632_RS18950at 3577.848 kb on - strand, within LU632_RS18950at 3577.903 kb on - strand, within LU632_RS18950at 3577.922 kb on + strand, within LU632_RS18950at 3578.017 kb on + strandat 3578.031 kb on + strandat 3578.174 kb on - strandat 3578.258 kb on - strandat 3578.322 kb on + strandat 3578.327 kb on - strandat 3578.327 kb on - strandat 3578.336 kb on + strandat 3578.336 kb on + strandat 3578.336 kb on + strandat 3578.337 kb on - strandat 3578.340 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Sucrose
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3,575,817 + LU632_RS18935 0.78 -0.6
3,575,818 - LU632_RS18935 0.78 -0.9
3,576,146 - LU632_RS18935 0.87 -0.7
3,576,146 - LU632_RS18935 0.87 +0.0
3,576,241 - LU632_RS18935 0.89 -0.3
3,576,251 + LU632_RS18935 0.90 +1.7
3,576,252 - LU632_RS18935 0.90 +0.4
3,576,253 + LU632_RS18935 0.90 +1.7
3,576,254 - LU632_RS18935 0.90 -0.5
3,576,254 - LU632_RS18935 0.90 -0.3
3,576,302 - -0.7
3,576,417 + -0.7
3,576,518 - +0.1
3,576,528 + -0.4
3,576,528 + -0.1
3,576,602 - +0.1
3,576,659 + +1.0
3,576,779 - LU632_RS18940 0.11 +0.6
3,576,864 - LU632_RS18940 0.24 +0.7
3,576,870 - LU632_RS18940 0.25 -0.5
3,576,897 - LU632_RS18940 0.29 -0.1
3,577,007 + LU632_RS18940 0.47 +0.2
3,577,008 - LU632_RS18940 0.47 -0.1
3,577,009 + LU632_RS18940 0.47 +0.3
3,577,009 + LU632_RS18940 0.47 -0.1
3,577,009 + LU632_RS18940 0.47 -0.3
3,577,009 + LU632_RS18940 0.47 +0.0
3,577,010 - LU632_RS18940 0.47 -0.6
3,577,010 - LU632_RS18940 0.47 +1.0
3,577,097 + LU632_RS18940 0.61 +0.1
3,577,132 + LU632_RS18940 0.66 +0.1
3,577,132 + LU632_RS18940 0.66 +0.6
3,577,132 + LU632_RS18940 0.66 +1.1
3,577,132 + LU632_RS18940 0.66 -1.2
3,577,132 + LU632_RS18940 0.66 +0.0
3,577,132 + LU632_RS18940 0.66 +0.8
3,577,132 + LU632_RS18940 0.66 +0.1
3,577,133 - LU632_RS18940 0.67 +0.4
3,577,133 - LU632_RS18940 0.67 +0.7
3,577,133 - LU632_RS18940 0.67 -1.3
3,577,133 - LU632_RS18940 0.67 -0.5
3,577,133 - LU632_RS18940 0.67 -1.4
3,577,133 - LU632_RS18940 0.67 +0.1
3,577,133 - LU632_RS18940 0.67 -0.2
3,577,133 - LU632_RS18940 0.67 +1.1
3,577,135 + LU632_RS18940 0.67 -0.1
3,577,135 + LU632_RS18940 0.67 +0.8
3,577,135 + LU632_RS18940 0.67 -1.5
3,577,135 + LU632_RS18940 0.67 +0.1
3,577,135 + LU632_RS18940 0.67 -0.5
3,577,135 + LU632_RS18940 0.67 +0.3
3,577,135 + LU632_RS18940 0.67 +0.1
3,577,136 - LU632_RS18940 0.67 -0.9
3,577,136 - LU632_RS18940 0.67 +0.8
3,577,136 - LU632_RS18940 0.67 +0.5
3,577,136 - LU632_RS18940 0.67 -1.1
3,577,137 + LU632_RS18940 0.67 +0.3
3,577,137 + LU632_RS18940 0.67 -0.3
3,577,137 + LU632_RS18940 0.67 -0.2
3,577,137 + LU632_RS18940 0.67 +0.7
3,577,138 - LU632_RS18940 0.67 +0.4
3,577,138 - LU632_RS18940 0.67 +1.8
3,577,138 - LU632_RS18940 0.67 +0.0
3,577,138 - LU632_RS18940 0.67 -1.1
3,577,138 - LU632_RS18940 0.67 -1.1
3,577,138 - LU632_RS18940 0.67 +0.4
3,577,362 + -0.2
3,577,366 + -0.0
3,577,464 + LU632_RS18945 0.33 -0.5
3,577,465 - LU632_RS18945 0.33 -0.5
3,577,465 - LU632_RS18945 0.33 +1.1
3,577,555 - LU632_RS18945 0.62 -0.5
3,577,561 - LU632_RS18945 0.64 -0.4
3,577,566 - LU632_RS18945 0.66 -0.1
3,577,571 + LU632_RS18945 0.68 +0.1
3,577,572 - LU632_RS18945 0.68 -0.3
3,577,697 + -2.2
3,577,799 + LU632_RS18950 0.30 -0.3
3,577,799 + LU632_RS18950 0.30 -0.6
3,577,800 - LU632_RS18950 0.31 +0.2
3,577,836 + LU632_RS18950 0.41 +0.4
3,577,841 - LU632_RS18950 0.43 +0.0
3,577,841 - LU632_RS18950 0.43 +0.6
3,577,845 + LU632_RS18950 0.44 +0.1
3,577,846 - LU632_RS18950 0.44 +0.3
3,577,846 - LU632_RS18950 0.44 +0.2
3,577,846 - LU632_RS18950 0.44 -1.7
3,577,846 - LU632_RS18950 0.44 +0.8
3,577,846 - LU632_RS18950 0.44 -1.2
3,577,846 - LU632_RS18950 0.44 +0.3
3,577,846 - LU632_RS18950 0.44 +0.1
3,577,847 + LU632_RS18950 0.45 -0.1
3,577,847 + LU632_RS18950 0.45 -0.7
3,577,848 - LU632_RS18950 0.45 +1.1
3,577,848 - LU632_RS18950 0.45 -0.1
3,577,848 - LU632_RS18950 0.45 -1.1
3,577,903 - LU632_RS18950 0.61 +0.1
3,577,922 + LU632_RS18950 0.67 +0.1
3,578,017 + +0.5
3,578,031 + +0.2
3,578,174 - -0.0
3,578,258 - +0.2
3,578,322 + +0.2
3,578,327 - -0.9
3,578,327 - -0.3
3,578,336 + -0.8
3,578,336 + -0.3
3,578,336 + -0.5
3,578,337 - +0.1
3,578,340 - -0.7

Or see this region's nucleotide sequence