Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13850

Experiment: HBM-Sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	HBM-Sucrose
2,657,345	+	fliD	LU632_RS13840	0.59	+1.2
2,657,345	+	fliD	LU632_RS13840	0.59	-0.5
2,657,346	-	fliD	LU632_RS13840	0.59	-0.2
2,657,347	+	fliD	LU632_RS13840	0.59	-1.3
2,657,384	+	fliD	LU632_RS13840	0.62	-0.9
2,657,384	+	fliD	LU632_RS13840	0.62	-0.7
2,657,394	+	fliD	LU632_RS13840	0.63	-1.7
2,657,394	+	fliD	LU632_RS13840	0.63	-0.6
2,657,394	+	fliD	LU632_RS13840	0.63	-1.0
2,657,405	-	fliD	LU632_RS13840	0.63	-0.2
2,657,461	+	fliD	LU632_RS13840	0.67	+0.1
2,657,515	+	fliD	LU632_RS13840	0.71	+0.4
2,657,668	+	fliD	LU632_RS13840	0.82	+0.0
2,657,677	+	fliD	LU632_RS13840	0.83	+0.6
2,657,807	+				+0.1
2,657,863	+				+0.5
2,657,863	+				+1.0
2,657,937	+				+1.9
2,657,937	+				+0.9
2,658,198	+	fliS	LU632_RS13845	0.65	-0.5
2,658,339	+				-2.5
2,658,362	-				-0.2
2,658,533	-	fliT	LU632_RS13850	0.52	-0.9
2,658,648	-	fliT	LU632_RS13850	0.83	-0.4
2,658,657	+	fliT	LU632_RS13850	0.85	-0.6
2,658,658	-	fliT	LU632_RS13850	0.86	-0.3
2,658,659	+	fliT	LU632_RS13850	0.86	+0.1
2,658,763	+				+0.5
2,658,880	+				+0.3
2,658,880	+				-0.1
2,658,976	+	amyA	LU632_RS13855	0.16	+0.2
2,658,979	-	amyA	LU632_RS13855	0.17	+0.8
2,658,998	-	amyA	LU632_RS13855	0.19	-0.5
2,659,015	-	amyA	LU632_RS13855	0.21	+0.3
2,659,018	+	amyA	LU632_RS13855	0.22	-0.1
2,659,019	-	amyA	LU632_RS13855	0.22	-0.1
2,659,019	-	amyA	LU632_RS13855	0.22	-1.1
2,659,019	-	amyA	LU632_RS13855	0.22	-2.5
2,659,019	-	amyA	LU632_RS13855	0.22	+0.1
2,659,072	+	amyA	LU632_RS13855	0.28	-0.4
2,659,073	-	amyA	LU632_RS13855	0.29	-0.3
2,659,073	-	amyA	LU632_RS13855	0.29	+0.9
2,659,073	-	amyA	LU632_RS13855	0.29	+0.5
2,659,296	+	amyA	LU632_RS13855	0.56	+0.1
2,659,357	+	amyA	LU632_RS13855	0.64	+0.1
2,659,358	-	amyA	LU632_RS13855	0.64	+0.9
2,659,360	+	amyA	LU632_RS13855	0.64	+0.1
2,659,360	+	amyA	LU632_RS13855	0.64	+0.2
2,659,361	-	amyA	LU632_RS13855	0.64	-0.1
2,659,361	-	amyA	LU632_RS13855	0.64	+0.6
2,659,363	-	amyA	LU632_RS13855	0.65	-0.1
2,659,565	-	amyA	LU632_RS13855	0.90	+0.9
2,659,572	-				+0.2
2,659,572	-				+0.7
2,659,601	+				+0.6
2,659,649	+				-0.6
2,659,650	-				-1.5
2,659,650	-				+0.7
2,659,652	-				+0.8
2,659,652	-				+0.1
2,659,672	-				+1.1