Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdoH and LU632_RS10280 are separated by 137 nucleotides LU632_RS10280 and LU632_RS10285 are separated by 6 nucleotides LU632_RS10285 and LU632_RS10290 are separated by 347 nucleotides
LU632_RS10275: mdoH - glucans biosynthesis glucosyltransferase MdoH, at 1,962,508 to 1,965,075
mdoH
LU632_RS10280: LU632_RS10280 - YceK/YidQ family lipoprotein, at 1,965,213 to 1,965,452
_RS10280
LU632_RS10285: LU632_RS10285 - MysB family protein, at 1,965,459 to 1,965,857
_RS10285
LU632_RS10290: LU632_RS10290 - DUF1440 domain-containing protein, at 1,966,205 to 1,966,762
_RS10290
Position (kb) 1965
1966 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1964.352 kb on + strand, within mdoH at 1964.705 kb on - strand, within mdoH at 1964.740 kb on + strand, within mdoH at 1964.782 kb on - strand, within mdoH at 1965.004 kb on + strand at 1965.005 kb on - strand at 1965.026 kb on - strand at 1965.262 kb on + strand, within LU632_RS10280 at 1965.262 kb on + strand, within LU632_RS10280 at 1965.262 kb on + strand, within LU632_RS10280 at 1965.262 kb on + strand, within LU632_RS10280 at 1965.263 kb on - strand, within LU632_RS10280 at 1965.263 kb on - strand, within LU632_RS10280 at 1965.281 kb on + strand, within LU632_RS10280 at 1965.282 kb on - strand, within LU632_RS10280 at 1965.324 kb on + strand, within LU632_RS10280 at 1965.377 kb on + strand, within LU632_RS10280 at 1965.453 kb on + strand at 1965.454 kb on - strand at 1965.454 kb on - strand at 1965.457 kb on + strand at 1965.457 kb on + strand at 1965.458 kb on - strand at 1965.466 kb on + strand at 1965.466 kb on + strand at 1965.466 kb on + strand at 1965.467 kb on - strand at 1965.483 kb on - strand at 1965.578 kb on + strand, within LU632_RS10285 at 1965.579 kb on - strand, within LU632_RS10285 at 1965.716 kb on + strand, within LU632_RS10285 at 1965.716 kb on + strand, within LU632_RS10285 at 1965.716 kb on + strand, within LU632_RS10285 at 1965.717 kb on - strand, within LU632_RS10285 at 1965.717 kb on - strand, within LU632_RS10285 at 1965.717 kb on - strand, within LU632_RS10285 at 1965.717 kb on - strand, within LU632_RS10285 at 1965.717 kb on - strand, within LU632_RS10285 at 1965.717 kb on - strand, within LU632_RS10285 at 1965.740 kb on - strand, within LU632_RS10285 at 1965.949 kb on + strand at 1966.130 kb on - strand at 1966.198 kb on + strand at 1966.198 kb on + strand at 1966.199 kb on - strand at 1966.199 kb on - strand at 1966.199 kb on - strand at 1966.202 kb on + strand at 1966.203 kb on - strand at 1966.203 kb on - strand at 1966.203 kb on - strand at 1966.203 kb on - strand at 1966.203 kb on - strand at 1966.286 kb on - strand, within LU632_RS10290 at 1966.316 kb on + strand, within LU632_RS10290 at 1966.316 kb on + strand, within LU632_RS10290 at 1966.316 kb on + strand, within LU632_RS10290 at 1966.421 kb on - strand, within LU632_RS10290
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 1,964,352 + mdoH LU632_RS10275 0.72 -0.1 1,964,705 - mdoH LU632_RS10275 0.86 +0.9 1,964,740 + mdoH LU632_RS10275 0.87 -1.1 1,964,782 - mdoH LU632_RS10275 0.89 +0.9 1,965,004 + -1.1 1,965,005 - +0.9 1,965,026 - -2.0 1,965,262 + LU632_RS10280 0.20 +0.2 1,965,262 + LU632_RS10280 0.20 +1.1 1,965,262 + LU632_RS10280 0.20 -0.6 1,965,262 + LU632_RS10280 0.20 +0.6 1,965,263 - LU632_RS10280 0.21 +0.1 1,965,263 - LU632_RS10280 0.21 -0.7 1,965,281 + LU632_RS10280 0.28 -0.2 1,965,282 - LU632_RS10280 0.29 -0.4 1,965,324 + LU632_RS10280 0.46 -0.5 1,965,377 + LU632_RS10280 0.68 -0.2 1,965,453 + +1.3 1,965,454 - -1.1 1,965,454 - +0.7 1,965,457 + -1.0 1,965,457 + -0.7 1,965,458 - -0.3 1,965,466 + -0.0 1,965,466 + -0.0 1,965,466 + -0.5 1,965,467 - +0.1 1,965,483 - +0.1 1,965,578 + LU632_RS10285 0.30 +1.8 1,965,579 - LU632_RS10285 0.30 -1.3 1,965,716 + LU632_RS10285 0.64 +0.2 1,965,716 + LU632_RS10285 0.64 -0.4 1,965,716 + LU632_RS10285 0.64 -0.0 1,965,717 - LU632_RS10285 0.65 -0.4 1,965,717 - LU632_RS10285 0.65 -0.2 1,965,717 - LU632_RS10285 0.65 +0.7 1,965,717 - LU632_RS10285 0.65 -0.6 1,965,717 - LU632_RS10285 0.65 -0.5 1,965,717 - LU632_RS10285 0.65 +0.5 1,965,740 - LU632_RS10285 0.70 +1.1 1,965,949 + +0.3 1,966,130 - -0.2 1,966,198 + +0.1 1,966,198 + -0.5 1,966,199 - -0.8 1,966,199 - +0.3 1,966,199 - +0.5 1,966,202 + +0.4 1,966,203 - +0.3 1,966,203 - -0.1 1,966,203 - +0.1 1,966,203 - -0.1 1,966,203 - -0.3 1,966,286 - LU632_RS10290 0.15 +1.2 1,966,316 + LU632_RS10290 0.20 -1.7 1,966,316 + LU632_RS10290 0.20 -1.0 1,966,316 + LU632_RS10290 0.20 +0.5 1,966,421 - LU632_RS10290 0.39 -1.1
Or see this region's nucleotide sequence