Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08360

Experiment: HBM-Sucrose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdapE and LU632_RS08360 are separated by 2 nucleotidesLU632_RS08360 and LU632_RS08365 overlap by 2 nucleotidesLU632_RS08365 and LU632_RS08370 are separated by 63 nucleotides LU632_RS08355: dapE - succinyl-diaminopimelate desuccinylase, at 1,572,170 to 1,573,297 dapE LU632_RS08360: LU632_RS08360 - ArsC family reductase, at 1,573,300 to 1,573,686 _RS08360 LU632_RS08365: LU632_RS08365 - hypothetical protein, at 1,573,685 to 1,574,059 _RS08365 LU632_RS08370: LU632_RS08370 - IS5 family transposase, at 1,574,123 to 1,574,949 _RS08370 Position (kb) 1573 1574Strain fitness (log2 ratio) -2 -1 0 1at 1573.329 kb on - strandat 1573.356 kb on + strand, within LU632_RS08360at 1573.356 kb on + strand, within LU632_RS08360at 1573.415 kb on - strand, within LU632_RS08360at 1573.438 kb on - strand, within LU632_RS08360at 1573.441 kb on - strand, within LU632_RS08360at 1573.453 kb on + strand, within LU632_RS08360at 1573.804 kb on - strand, within LU632_RS08365at 1573.889 kb on - strand, within LU632_RS08365at 1573.933 kb on + strand, within LU632_RS08365at 1573.934 kb on - strand, within LU632_RS08365at 1574.034 kb on + strandat 1574.035 kb on - strandat 1574.035 kb on - strandat 1574.057 kb on + strandat 1574.057 kb on + strandat 1574.062 kb on - strandat 1574.062 kb on - strandat 1574.062 kb on - strandat 1574.062 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Sucrose
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1,573,329 - -0.6
1,573,356 + LU632_RS08360 0.14 -1.3
1,573,356 + LU632_RS08360 0.14 -2.0
1,573,415 - LU632_RS08360 0.30 -0.3
1,573,438 - LU632_RS08360 0.36 +0.2
1,573,441 - LU632_RS08360 0.36 +0.8
1,573,453 + LU632_RS08360 0.40 -1.6
1,573,804 - LU632_RS08365 0.32 -1.6
1,573,889 - LU632_RS08365 0.54 +0.2
1,573,933 + LU632_RS08365 0.66 -0.3
1,573,934 - LU632_RS08365 0.66 +0.2
1,574,034 + -0.4
1,574,035 - -0.3
1,574,035 - -0.7
1,574,057 + -0.5
1,574,057 + +0.7
1,574,062 - -0.3
1,574,062 - -0.2
1,574,062 - -0.5
1,574,062 - -0.6

Or see this region's nucleotide sequence