Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purF and LU632_RS07870 are separated by 96 nucleotides LU632_RS07870 and LU632_RS07875 are separated by 37 nucleotides LU632_RS07875 and LU632_RS07880 are separated by 319 nucleotides
LU632_RS07865: purF - amidophosphoribosyltransferase, at 1,469,155 to 1,470,672
purF
LU632_RS07870: LU632_RS07870 - UbiX family flavin prenyltransferase, at 1,470,769 to 1,471,338
_RS07870
LU632_RS07875: LU632_RS07875 - ATP-binding cassette domain-containing protein, at 1,471,376 to 1,471,766
_RS07875
LU632_RS07880: LU632_RS07880 - TIGR01777 family oxidoreductase, at 1,472,086 to 1,472,979
_RS07880
Position (kb) 1470
1471
1472 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 1469.769 kb on + strand, within purF at 1469.769 kb on + strand, within purF at 1469.769 kb on + strand, within purF at 1469.769 kb on + strand, within purF at 1469.769 kb on + strand, within purF at 1469.769 kb on + strand, within purF at 1469.770 kb on - strand, within purF at 1469.770 kb on - strand, within purF at 1469.770 kb on - strand, within purF at 1469.804 kb on + strand, within purF at 1469.804 kb on + strand, within purF at 1469.805 kb on - strand, within purF at 1469.848 kb on + strand, within purF at 1469.848 kb on + strand, within purF at 1469.849 kb on - strand, within purF at 1469.905 kb on - strand, within purF at 1469.905 kb on - strand, within purF at 1469.923 kb on + strand, within purF at 1469.923 kb on + strand, within purF at 1469.924 kb on - strand, within purF at 1469.971 kb on + strand, within purF at 1469.989 kb on - strand, within purF at 1470.041 kb on + strand, within purF at 1470.041 kb on + strand, within purF at 1470.041 kb on + strand, within purF at 1470.042 kb on - strand, within purF at 1470.159 kb on + strand, within purF at 1470.159 kb on + strand, within purF at 1470.159 kb on + strand, within purF at 1470.160 kb on - strand, within purF at 1470.160 kb on - strand, within purF at 1470.207 kb on + strand, within purF at 1470.252 kb on - strand, within purF at 1470.328 kb on + strand, within purF at 1470.329 kb on - strand, within purF at 1470.381 kb on + strand, within purF at 1470.382 kb on - strand, within purF at 1470.382 kb on - strand, within purF at 1470.382 kb on - strand, within purF at 1470.382 kb on - strand, within purF at 1470.551 kb on - strand at 1470.578 kb on - strand at 1470.689 kb on - strand at 1470.695 kb on + strand at 1470.695 kb on + strand at 1470.698 kb on + strand at 1470.698 kb on + strand at 1470.698 kb on + strand at 1470.698 kb on + strand at 1470.698 kb on + strand at 1470.698 kb on + strand at 1470.698 kb on + strand at 1470.699 kb on - strand at 1470.699 kb on - strand at 1470.699 kb on - strand at 1470.714 kb on + strand at 1471.336 kb on + strand at 1471.337 kb on - strand at 1471.398 kb on - strand at 1471.566 kb on - strand, within LU632_RS07875 at 1471.681 kb on + strand, within LU632_RS07875 at 1471.736 kb on - strand at 1471.736 kb on - strand at 1471.764 kb on + strand at 1471.764 kb on + strand at 1471.765 kb on - strand at 1471.897 kb on + strand at 1471.947 kb on + strand at 1471.947 kb on + strand at 1472.033 kb on + strand at 1472.033 kb on + strand at 1472.033 kb on + strand at 1472.034 kb on - strand at 1472.034 kb on - strand at 1472.034 kb on - strand at 1472.082 kb on + strand at 1472.082 kb on + strand at 1472.088 kb on - strand at 1472.133 kb on + strand at 1472.236 kb on + strand, within LU632_RS07880 at 1472.289 kb on + strand, within LU632_RS07880 at 1472.289 kb on + strand, within LU632_RS07880 at 1472.289 kb on + strand, within LU632_RS07880 at 1472.289 kb on + strand, within LU632_RS07880 at 1472.290 kb on - strand, within LU632_RS07880 at 1472.293 kb on + strand, within LU632_RS07880 at 1472.293 kb on + strand, within LU632_RS07880 at 1472.294 kb on - strand, within LU632_RS07880 at 1472.294 kb on - strand, within LU632_RS07880 at 1472.299 kb on - strand, within LU632_RS07880
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 1,469,769 + purF LU632_RS07865 0.40 -4.9 1,469,769 + purF LU632_RS07865 0.40 -4.0 1,469,769 + purF LU632_RS07865 0.40 -5.5 1,469,769 + purF LU632_RS07865 0.40 -4.0 1,469,769 + purF LU632_RS07865 0.40 -4.1 1,469,769 + purF LU632_RS07865 0.40 -4.1 1,469,770 - purF LU632_RS07865 0.41 -6.3 1,469,770 - purF LU632_RS07865 0.41 -1.7 1,469,770 - purF LU632_RS07865 0.41 -3.4 1,469,804 + purF LU632_RS07865 0.43 -3.7 1,469,804 + purF LU632_RS07865 0.43 -5.6 1,469,805 - purF LU632_RS07865 0.43 -3.0 1,469,848 + purF LU632_RS07865 0.46 -1.9 1,469,848 + purF LU632_RS07865 0.46 -3.4 1,469,849 - purF LU632_RS07865 0.46 -1.9 1,469,905 - purF LU632_RS07865 0.49 -5.7 1,469,905 - purF LU632_RS07865 0.49 -2.4 1,469,923 + purF LU632_RS07865 0.51 -4.4 1,469,923 + purF LU632_RS07865 0.51 -2.4 1,469,924 - purF LU632_RS07865 0.51 -4.0 1,469,971 + purF LU632_RS07865 0.54 -5.6 1,469,989 - purF LU632_RS07865 0.55 -2.0 1,470,041 + purF LU632_RS07865 0.58 -1.9 1,470,041 + purF LU632_RS07865 0.58 -4.6 1,470,041 + purF LU632_RS07865 0.58 -4.0 1,470,042 - purF LU632_RS07865 0.58 -5.6 1,470,159 + purF LU632_RS07865 0.66 -2.7 1,470,159 + purF LU632_RS07865 0.66 -6.1 1,470,159 + purF LU632_RS07865 0.66 -3.3 1,470,160 - purF LU632_RS07865 0.66 -0.6 1,470,160 - purF LU632_RS07865 0.66 -0.0 1,470,207 + purF LU632_RS07865 0.69 -2.0 1,470,252 - purF LU632_RS07865 0.72 -5.5 1,470,328 + purF LU632_RS07865 0.77 -4.0 1,470,329 - purF LU632_RS07865 0.77 -1.4 1,470,381 + purF LU632_RS07865 0.81 -3.6 1,470,382 - purF LU632_RS07865 0.81 -4.2 1,470,382 - purF LU632_RS07865 0.81 -1.0 1,470,382 - purF LU632_RS07865 0.81 -3.5 1,470,382 - purF LU632_RS07865 0.81 -2.4 1,470,551 - -3.8 1,470,578 - -2.6 1,470,689 - +1.0 1,470,695 + -0.5 1,470,695 + -0.1 1,470,698 + +0.6 1,470,698 + -0.5 1,470,698 + -1.4 1,470,698 + +0.5 1,470,698 + -0.7 1,470,698 + -0.4 1,470,698 + -0.7 1,470,699 - -1.0 1,470,699 - -2.0 1,470,699 - -0.9 1,470,714 + +0.8 1,471,336 + -1.6 1,471,337 - -0.2 1,471,398 - +0.0 1,471,566 - LU632_RS07875 0.49 +0.1 1,471,681 + LU632_RS07875 0.78 +0.1 1,471,736 - -0.4 1,471,736 - -0.3 1,471,764 + -0.4 1,471,764 + +0.8 1,471,765 - +0.3 1,471,897 + -0.1 1,471,947 + -0.5 1,471,947 + +0.6 1,472,033 + -0.4 1,472,033 + -0.6 1,472,033 + -0.1 1,472,034 - +0.2 1,472,034 - +0.6 1,472,034 - -0.3 1,472,082 + -0.0 1,472,082 + -2.1 1,472,088 - -0.4 1,472,133 + +0.2 1,472,236 + LU632_RS07880 0.17 -0.3 1,472,289 + LU632_RS07880 0.23 -0.4 1,472,289 + LU632_RS07880 0.23 +1.5 1,472,289 + LU632_RS07880 0.23 -0.1 1,472,289 + LU632_RS07880 0.23 +0.4 1,472,290 - LU632_RS07880 0.23 +0.6 1,472,293 + LU632_RS07880 0.23 +0.9 1,472,293 + LU632_RS07880 0.23 +0.3 1,472,294 - LU632_RS07880 0.23 -0.3 1,472,294 - LU632_RS07880 0.23 -1.0 1,472,299 - LU632_RS07880 0.24 +0.4
Or see this region's nucleotide sequence