Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07710

Experiment: HBM-Sucrose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS07700 and LU632_RS07705 are separated by 2 nucleotidesLU632_RS07705 and LU632_RS07710 are separated by 17 nucleotidesLU632_RS07710 and LU632_RS07715 are separated by 76 nucleotidesLU632_RS07715 and LU632_RS07720 are separated by 2 nucleotidesLU632_RS07720 and LU632_RS07725 are separated by 3 nucleotides LU632_RS07700: LU632_RS07700 - AAA family ATPase, at 1,441,002 to 1,442,168 _RS07700 LU632_RS07705: LU632_RS07705 - hypothetical protein, at 1,442,171 to 1,442,443 _RS07705 LU632_RS07710: LU632_RS07710 - DUF3164 family protein, at 1,442,461 to 1,443,072 _RS07710 LU632_RS07715: LU632_RS07715 - hypothetical protein, at 1,443,149 to 1,443,550 _RS07715 LU632_RS07720: LU632_RS07720 - hypothetical protein, at 1,443,553 to 1,443,741 _RS07720 LU632_RS07725: LU632_RS07725 - DUF2786 domain-containing protein, at 1,443,745 to 1,444,437 _RS07725 Position (kb) 1442 1443 1444Strain fitness (log2 ratio) -2 -1 0 1at 1441.543 kb on - strand, within LU632_RS07700at 1441.614 kb on - strand, within LU632_RS07700at 1442.069 kb on - strandat 1442.069 kb on - strandat 1442.069 kb on - strandat 1442.069 kb on - strandat 1442.224 kb on - strand, within LU632_RS07705at 1442.346 kb on - strand, within LU632_RS07705at 1442.351 kb on - strand, within LU632_RS07705at 1442.352 kb on - strand, within LU632_RS07705at 1442.434 kb on - strandat 1442.438 kb on - strandat 1442.486 kb on - strandat 1442.536 kb on + strand, within LU632_RS07710at 1442.638 kb on + strand, within LU632_RS07710at 1442.649 kb on - strand, within LU632_RS07710at 1442.669 kb on - strand, within LU632_RS07710at 1442.736 kb on + strand, within LU632_RS07710at 1443.002 kb on - strand, within LU632_RS07710at 1443.002 kb on - strand, within LU632_RS07710at 1443.004 kb on - strand, within LU632_RS07710at 1443.057 kb on + strandat 1443.058 kb on - strandat 1443.060 kb on - strandat 1443.060 kb on - strandat 1443.060 kb on - strandat 1443.060 kb on - strandat 1443.077 kb on - strandat 1443.148 kb on + strandat 1443.149 kb on - strandat 1443.149 kb on - strandat 1443.149 kb on - strandat 1443.149 kb on - strandat 1443.149 kb on - strandat 1443.149 kb on - strandat 1443.232 kb on + strand, within LU632_RS07715at 1443.252 kb on + strand, within LU632_RS07715at 1443.253 kb on - strand, within LU632_RS07715at 1443.284 kb on + strand, within LU632_RS07715at 1443.285 kb on - strand, within LU632_RS07715at 1443.285 kb on - strand, within LU632_RS07715at 1443.340 kb on + strand, within LU632_RS07715at 1443.481 kb on - strand, within LU632_RS07715at 1443.535 kb on + strandat 1443.536 kb on - strandat 1443.565 kb on - strandat 1443.630 kb on - strand, within LU632_RS07720at 1443.633 kb on + strand, within LU632_RS07720at 1443.634 kb on - strand, within LU632_RS07720at 1443.707 kb on - strand, within LU632_RS07720at 1443.722 kb on + strand, within LU632_RS07720at 1443.722 kb on + strand, within LU632_RS07720at 1443.723 kb on - strandat 1443.904 kb on - strand, within LU632_RS07725at 1443.958 kb on + strand, within LU632_RS07725at 1443.959 kb on - strand, within LU632_RS07725at 1443.982 kb on - strand, within LU632_RS07725at 1444.003 kb on - strand, within LU632_RS07725at 1444.011 kb on + strand, within LU632_RS07725at 1444.011 kb on + strand, within LU632_RS07725at 1444.012 kb on - strand, within LU632_RS07725at 1444.045 kb on + strand, within LU632_RS07725at 1444.054 kb on - strand, within LU632_RS07725

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Sucrose
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1,441,543 - LU632_RS07700 0.46 -1.0
1,441,614 - LU632_RS07700 0.52 +0.4
1,442,069 - -0.4
1,442,069 - -0.6
1,442,069 - -0.6
1,442,069 - -0.3
1,442,224 - LU632_RS07705 0.19 -0.1
1,442,346 - LU632_RS07705 0.64 +1.0
1,442,351 - LU632_RS07705 0.66 -1.5
1,442,352 - LU632_RS07705 0.66 -0.5
1,442,434 - -1.0
1,442,438 - +1.0
1,442,486 - +0.5
1,442,536 + LU632_RS07710 0.12 -0.4
1,442,638 + LU632_RS07710 0.29 -0.6
1,442,649 - LU632_RS07710 0.31 -0.9
1,442,669 - LU632_RS07710 0.34 -0.3
1,442,736 + LU632_RS07710 0.45 -0.6
1,443,002 - LU632_RS07710 0.88 -0.2
1,443,002 - LU632_RS07710 0.88 +0.3
1,443,004 - LU632_RS07710 0.89 -0.3
1,443,057 + -0.2
1,443,058 - -0.2
1,443,060 - +0.5
1,443,060 - +0.3
1,443,060 - -0.1
1,443,060 - +0.0
1,443,077 - -1.0
1,443,148 + -0.6
1,443,149 - -0.0
1,443,149 - -0.1
1,443,149 - -1.0
1,443,149 - -0.2
1,443,149 - -0.1
1,443,149 - -0.6
1,443,232 + LU632_RS07715 0.21 -0.6
1,443,252 + LU632_RS07715 0.26 -0.5
1,443,253 - LU632_RS07715 0.26 -0.6
1,443,284 + LU632_RS07715 0.34 -2.0
1,443,285 - LU632_RS07715 0.34 -0.4
1,443,285 - LU632_RS07715 0.34 -1.9
1,443,340 + LU632_RS07715 0.48 -0.9
1,443,481 - LU632_RS07715 0.83 -0.3
1,443,535 + -2.6
1,443,536 - -0.3
1,443,565 - -0.1
1,443,630 - LU632_RS07720 0.41 +0.1
1,443,633 + LU632_RS07720 0.42 -1.8
1,443,634 - LU632_RS07720 0.43 +0.1
1,443,707 - LU632_RS07720 0.81 -0.1
1,443,722 + LU632_RS07720 0.89 +0.5
1,443,722 + LU632_RS07720 0.89 -1.7
1,443,723 - -0.5
1,443,904 - LU632_RS07725 0.23 -0.1
1,443,958 + LU632_RS07725 0.31 -0.4
1,443,959 - LU632_RS07725 0.31 -0.0
1,443,982 - LU632_RS07725 0.34 -0.3
1,444,003 - LU632_RS07725 0.37 -0.1
1,444,011 + LU632_RS07725 0.38 +1.5
1,444,011 + LU632_RS07725 0.38 +1.7
1,444,012 - LU632_RS07725 0.39 -0.9
1,444,045 + LU632_RS07725 0.43 +0.2
1,444,054 - LU632_RS07725 0.45 -0.2

Or see this region's nucleotide sequence