Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04750 and LU632_RS04755 overlap by 11 nucleotides LU632_RS04755 and LU632_RS04760 are separated by 6 nucleotides LU632_RS04760 and LU632_RS04765 are separated by 48 nucleotides
LU632_RS04750: LU632_RS04750 - ATP-binding domain-containing protein, at 934,200 to 934,996
_RS04750
LU632_RS04755: LU632_RS04755 - TraI domain-containing protein, at 934,986 to 935,738
_RS04755
LU632_RS04760: LU632_RS04760 - DNA-binding domain-containing protein, at 935,745 to 936,566
_RS04760
LU632_RS04765: LU632_RS04765 - site-specific integrase, at 936,615 to 937,624
_RS04765
Position (kb) 935
936
937 Strain fitness (log2 ratio) -1
0
1 at 934.847 kb on + strand, within LU632_RS04750 at 934.847 kb on + strand, within LU632_RS04750 at 934.847 kb on + strand, within LU632_RS04750 at 934.847 kb on + strand, within LU632_RS04750 at 934.848 kb on - strand, within LU632_RS04750 at 934.848 kb on - strand, within LU632_RS04750 at 934.848 kb on - strand, within LU632_RS04750 at 934.935 kb on + strand at 934.936 kb on - strand at 935.073 kb on + strand, within LU632_RS04755 at 935.073 kb on + strand, within LU632_RS04755 at 935.074 kb on - strand, within LU632_RS04755 at 935.170 kb on + strand, within LU632_RS04755 at 935.170 kb on + strand, within LU632_RS04755 at 935.171 kb on - strand, within LU632_RS04755 at 935.171 kb on - strand, within LU632_RS04755 at 935.171 kb on - strand, within LU632_RS04755 at 935.298 kb on + strand, within LU632_RS04755 at 935.322 kb on + strand, within LU632_RS04755 at 935.324 kb on + strand, within LU632_RS04755 at 935.324 kb on + strand, within LU632_RS04755 at 935.324 kb on + strand, within LU632_RS04755 at 935.324 kb on + strand, within LU632_RS04755 at 935.325 kb on - strand, within LU632_RS04755 at 935.325 kb on - strand, within LU632_RS04755 at 935.325 kb on - strand, within LU632_RS04755 at 935.325 kb on - strand, within LU632_RS04755 at 935.325 kb on - strand, within LU632_RS04755 at 935.325 kb on - strand, within LU632_RS04755 at 935.325 kb on - strand, within LU632_RS04755 at 935.410 kb on - strand, within LU632_RS04755 at 935.476 kb on + strand, within LU632_RS04755 at 935.476 kb on + strand, within LU632_RS04755 at 935.476 kb on + strand, within LU632_RS04755 at 935.476 kb on + strand, within LU632_RS04755 at 935.477 kb on - strand, within LU632_RS04755 at 935.606 kb on + strand, within LU632_RS04755 at 935.660 kb on + strand, within LU632_RS04755 at 935.660 kb on + strand, within LU632_RS04755 at 935.661 kb on - strand, within LU632_RS04755 at 935.716 kb on + strand at 935.912 kb on + strand, within LU632_RS04760 at 935.912 kb on + strand, within LU632_RS04760 at 935.913 kb on - strand, within LU632_RS04760 at 935.913 kb on - strand, within LU632_RS04760 at 936.032 kb on + strand, within LU632_RS04760 at 936.033 kb on - strand, within LU632_RS04760 at 936.123 kb on - strand, within LU632_RS04760 at 936.183 kb on - strand, within LU632_RS04760 at 936.290 kb on + strand, within LU632_RS04760 at 936.290 kb on + strand, within LU632_RS04760 at 936.290 kb on + strand, within LU632_RS04760 at 936.290 kb on + strand, within LU632_RS04760 at 936.290 kb on + strand, within LU632_RS04760 at 936.290 kb on + strand, within LU632_RS04760 at 936.290 kb on + strand, within LU632_RS04760 at 936.290 kb on + strand, within LU632_RS04760 at 936.290 kb on + strand, within LU632_RS04760 at 936.291 kb on - strand, within LU632_RS04760 at 936.291 kb on - strand, within LU632_RS04760 at 936.291 kb on - strand, within LU632_RS04760 at 936.306 kb on - strand, within LU632_RS04760 at 936.464 kb on + strand, within LU632_RS04760 at 936.496 kb on - strand at 936.500 kb on + strand at 936.612 kb on - strand at 936.628 kb on + strand at 936.629 kb on - strand at 936.696 kb on + strand at 936.697 kb on + strand at 936.697 kb on - strand at 936.755 kb on + strand, within LU632_RS04765 at 936.855 kb on + strand, within LU632_RS04765 at 936.856 kb on - strand, within LU632_RS04765 at 936.857 kb on + strand, within LU632_RS04765 at 936.858 kb on - strand, within LU632_RS04765 at 936.908 kb on + strand, within LU632_RS04765 at 937.023 kb on - strand, within LU632_RS04765 at 937.059 kb on - strand, within LU632_RS04765 at 937.089 kb on - strand, within LU632_RS04765 at 937.091 kb on - strand, within LU632_RS04765 at 937.105 kb on - strand, within LU632_RS04765 at 937.135 kb on + strand, within LU632_RS04765 at 937.135 kb on + strand, within LU632_RS04765 at 937.135 kb on + strand, within LU632_RS04765 at 937.340 kb on - strand, within LU632_RS04765 at 937.423 kb on + strand, within LU632_RS04765 at 937.503 kb on + strand, within LU632_RS04765 at 937.517 kb on + strand, within LU632_RS04765 at 937.517 kb on + strand, within LU632_RS04765 at 937.518 kb on - strand, within LU632_RS04765 at 937.518 kb on - strand, within LU632_RS04765 at 937.518 kb on - strand, within LU632_RS04765
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 934,847 + LU632_RS04750 0.81 -0.2 934,847 + LU632_RS04750 0.81 +0.3 934,847 + LU632_RS04750 0.81 +0.3 934,847 + LU632_RS04750 0.81 +0.0 934,848 - LU632_RS04750 0.81 -0.3 934,848 - LU632_RS04750 0.81 -1.1 934,848 - LU632_RS04750 0.81 +0.1 934,935 + +1.7 934,936 - -0.1 935,073 + LU632_RS04755 0.12 -0.3 935,073 + LU632_RS04755 0.12 +0.5 935,074 - LU632_RS04755 0.12 +0.0 935,170 + LU632_RS04755 0.24 -0.3 935,170 + LU632_RS04755 0.24 -0.0 935,171 - LU632_RS04755 0.25 +0.2 935,171 - LU632_RS04755 0.25 +0.2 935,171 - LU632_RS04755 0.25 -0.5 935,298 + LU632_RS04755 0.41 -1.2 935,322 + LU632_RS04755 0.45 -0.4 935,324 + LU632_RS04755 0.45 -0.2 935,324 + LU632_RS04755 0.45 -0.9 935,324 + LU632_RS04755 0.45 +0.2 935,324 + LU632_RS04755 0.45 -0.1 935,325 - LU632_RS04755 0.45 -0.0 935,325 - LU632_RS04755 0.45 +1.1 935,325 - LU632_RS04755 0.45 +0.1 935,325 - LU632_RS04755 0.45 -0.4 935,325 - LU632_RS04755 0.45 -0.2 935,325 - LU632_RS04755 0.45 -0.6 935,325 - LU632_RS04755 0.45 +0.4 935,410 - LU632_RS04755 0.56 -1.0 935,476 + LU632_RS04755 0.65 +0.6 935,476 + LU632_RS04755 0.65 +0.1 935,476 + LU632_RS04755 0.65 +0.0 935,476 + LU632_RS04755 0.65 -0.2 935,477 - LU632_RS04755 0.65 -0.0 935,606 + LU632_RS04755 0.82 +1.1 935,660 + LU632_RS04755 0.90 -0.7 935,660 + LU632_RS04755 0.90 -0.5 935,661 - LU632_RS04755 0.90 -0.1 935,716 + -0.7 935,912 + LU632_RS04760 0.20 +0.2 935,912 + LU632_RS04760 0.20 +0.2 935,913 - LU632_RS04760 0.20 +0.2 935,913 - LU632_RS04760 0.20 +0.7 936,032 + LU632_RS04760 0.35 -0.5 936,033 - LU632_RS04760 0.35 -0.0 936,123 - LU632_RS04760 0.46 -0.5 936,183 - LU632_RS04760 0.53 -0.9 936,290 + LU632_RS04760 0.66 -0.5 936,290 + LU632_RS04760 0.66 +0.7 936,290 + LU632_RS04760 0.66 -0.3 936,290 + LU632_RS04760 0.66 +0.1 936,290 + LU632_RS04760 0.66 -0.3 936,290 + LU632_RS04760 0.66 +0.1 936,290 + LU632_RS04760 0.66 -0.2 936,290 + LU632_RS04760 0.66 +0.3 936,290 + LU632_RS04760 0.66 -0.7 936,291 - LU632_RS04760 0.66 -0.7 936,291 - LU632_RS04760 0.66 -0.2 936,291 - LU632_RS04760 0.66 -0.1 936,306 - LU632_RS04760 0.68 +0.7 936,464 + LU632_RS04760 0.87 +0.0 936,496 - -1.0 936,500 + +0.8 936,612 - -0.2 936,628 + +0.3 936,629 - +1.3 936,696 + -0.9 936,697 + -0.3 936,697 - -0.4 936,755 + LU632_RS04765 0.14 -0.1 936,855 + LU632_RS04765 0.24 +0.1 936,856 - LU632_RS04765 0.24 -1.7 936,857 + LU632_RS04765 0.24 -0.2 936,858 - LU632_RS04765 0.24 +0.2 936,908 + LU632_RS04765 0.29 -0.7 937,023 - LU632_RS04765 0.40 -0.3 937,059 - LU632_RS04765 0.44 +0.4 937,089 - LU632_RS04765 0.47 -0.2 937,091 - LU632_RS04765 0.47 -0.2 937,105 - LU632_RS04765 0.49 +0.1 937,135 + LU632_RS04765 0.51 +0.7 937,135 + LU632_RS04765 0.51 -0.7 937,135 + LU632_RS04765 0.51 -0.3 937,340 - LU632_RS04765 0.72 -0.2 937,423 + LU632_RS04765 0.80 -0.1 937,503 + LU632_RS04765 0.88 -0.1 937,517 + LU632_RS04765 0.89 +0.4 937,517 + LU632_RS04765 0.89 +0.7 937,518 - LU632_RS04765 0.89 -0.7 937,518 - LU632_RS04765 0.89 -0.2 937,518 - LU632_RS04765 0.89 -0.5
Or see this region's nucleotide sequence