Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04720

Experiment: HBM-Sucrose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04715 and LU632_RS04720 are separated by 207 nucleotidesLU632_RS04720 and LU632_RS04725 overlap by 14 nucleotides LU632_RS04715: LU632_RS04715 - IS5 family transposase, at 924,710 to 925,477 _RS04715 LU632_RS04720: LU632_RS04720 - response regulator transcription factor, at 925,685 to 926,320 _RS04720 LU632_RS04725: LU632_RS04725 - transporter substrate-binding domain-containing protein, at 926,307 to 929,459 _RS04725 Position (kb) 925 926 927Strain fitness (log2 ratio) -2 -1 0 1at 924.689 kb on + strandat 924.708 kb on + strandat 924.728 kb on + strandat 924.752 kb on - strandat 924.854 kb on - strand, within LU632_RS04715at 924.854 kb on - strand, within LU632_RS04715at 924.958 kb on + strand, within LU632_RS04715at 924.959 kb on - strand, within LU632_RS04715at 924.963 kb on - strand, within LU632_RS04715at 925.119 kb on + strand, within LU632_RS04715at 925.119 kb on - strand, within LU632_RS04715at 925.120 kb on - strand, within LU632_RS04715at 925.142 kb on - strand, within LU632_RS04715at 925.338 kb on - strand, within LU632_RS04715at 925.391 kb on - strand, within LU632_RS04715at 925.413 kb on - strandat 925.500 kb on - strandat 925.500 kb on - strandat 925.500 kb on - strandat 925.500 kb on - strandat 925.501 kb on + strandat 925.501 kb on + strandat 925.501 kb on + strandat 925.501 kb on + strandat 925.501 kb on + strandat 925.502 kb on + strandat 925.502 kb on - strandat 925.549 kb on - strandat 925.576 kb on + strandat 925.577 kb on - strandat 925.577 kb on - strandat 925.600 kb on + strandat 925.600 kb on + strandat 925.600 kb on + strandat 925.600 kb on + strandat 925.601 kb on - strandat 925.601 kb on - strandat 925.601 kb on - strandat 925.628 kb on + strandat 925.628 kb on + strandat 925.628 kb on + strandat 925.629 kb on - strandat 925.631 kb on - strandat 925.631 kb on - strandat 925.684 kb on + strandat 925.684 kb on + strandat 925.685 kb on - strandat 925.685 kb on - strandat 925.762 kb on + strand, within LU632_RS04720at 925.774 kb on + strand, within LU632_RS04720at 925.781 kb on - strand, within LU632_RS04720at 925.781 kb on - strand, within LU632_RS04720at 925.886 kb on - strand, within LU632_RS04720at 925.906 kb on + strand, within LU632_RS04720at 925.906 kb on + strand, within LU632_RS04720at 925.942 kb on - strand, within LU632_RS04720at 925.943 kb on + strand, within LU632_RS04720at 925.982 kb on - strand, within LU632_RS04720at 926.032 kb on + strand, within LU632_RS04720at 926.032 kb on + strand, within LU632_RS04720at 926.212 kb on + strand, within LU632_RS04720at 926.213 kb on - strand, within LU632_RS04720at 926.228 kb on + strand, within LU632_RS04720at 926.228 kb on + strand, within LU632_RS04720at 926.228 kb on + strand, within LU632_RS04720at 926.229 kb on - strand, within LU632_RS04720at 926.229 kb on - strand, within LU632_RS04720at 926.230 kb on + strand, within LU632_RS04720at 926.278 kb on + strandat 926.336 kb on - strandat 926.381 kb on + strandat 926.610 kb on + strandat 926.681 kb on + strand, within LU632_RS04725at 926.696 kb on - strand, within LU632_RS04725at 926.710 kb on - strand, within LU632_RS04725at 926.793 kb on + strand, within LU632_RS04725at 926.956 kb on + strand, within LU632_RS04725at 926.956 kb on + strand, within LU632_RS04725at 926.963 kb on - strand, within LU632_RS04725at 926.963 kb on - strand, within LU632_RS04725at 927.082 kb on + strand, within LU632_RS04725at 927.088 kb on + strand, within LU632_RS04725at 927.161 kb on + strand, within LU632_RS04725at 927.187 kb on + strand, within LU632_RS04725at 927.299 kb on + strand, within LU632_RS04725

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Sucrose
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924,689 + -1.0
924,708 + +0.6
924,728 + -0.5
924,752 - +0.2
924,854 - LU632_RS04715 0.19 +0.3
924,854 - LU632_RS04715 0.19 -0.4
924,958 + LU632_RS04715 0.32 +0.5
924,959 - LU632_RS04715 0.32 -0.3
924,963 - LU632_RS04715 0.33 -0.2
925,119 + LU632_RS04715 0.53 -0.3
925,119 - LU632_RS04715 0.53 -0.2
925,120 - LU632_RS04715 0.53 -0.6
925,142 - LU632_RS04715 0.56 -0.5
925,338 - LU632_RS04715 0.82 -0.4
925,391 - LU632_RS04715 0.89 +0.0
925,413 - +0.8
925,500 - +0.6
925,500 - -0.2
925,500 - +1.4
925,500 - +1.4
925,501 + +0.1
925,501 + +1.0
925,501 + -0.1
925,501 + +0.6
925,501 + +0.3
925,502 + +0.7
925,502 - +0.4
925,549 - +0.2
925,576 + -0.2
925,577 - -0.8
925,577 - -0.4
925,600 + +0.3
925,600 + +0.4
925,600 + +0.9
925,600 + -2.3
925,601 - -0.2
925,601 - -1.8
925,601 - -0.4
925,628 + +0.1
925,628 + -0.3
925,628 + +0.3
925,629 - -0.2
925,631 - -0.4
925,631 - +0.5
925,684 + +0.9
925,684 + -0.0
925,685 - -0.7
925,685 - +0.8
925,762 + LU632_RS04720 0.12 -0.1
925,774 + LU632_RS04720 0.14 +1.3
925,781 - LU632_RS04720 0.15 +0.5
925,781 - LU632_RS04720 0.15 +0.5
925,886 - LU632_RS04720 0.32 -0.2
925,906 + LU632_RS04720 0.35 +0.1
925,906 + LU632_RS04720 0.35 +0.6
925,942 - LU632_RS04720 0.40 +1.3
925,943 + LU632_RS04720 0.41 -1.0
925,982 - LU632_RS04720 0.47 -0.5
926,032 + LU632_RS04720 0.55 -0.1
926,032 + LU632_RS04720 0.55 +0.1
926,212 + LU632_RS04720 0.83 -0.3
926,213 - LU632_RS04720 0.83 +0.3
926,228 + LU632_RS04720 0.85 +0.3
926,228 + LU632_RS04720 0.85 +0.0
926,228 + LU632_RS04720 0.85 -0.9
926,229 - LU632_RS04720 0.86 -0.1
926,229 - LU632_RS04720 0.86 -0.3
926,230 + LU632_RS04720 0.86 -0.1
926,278 + +0.6
926,336 - +1.0
926,381 + +0.1
926,610 + -0.7
926,681 + LU632_RS04725 0.12 -0.3
926,696 - LU632_RS04725 0.12 -0.4
926,710 - LU632_RS04725 0.13 +0.7
926,793 + LU632_RS04725 0.15 -0.9
926,956 + LU632_RS04725 0.21 -0.9
926,956 + LU632_RS04725 0.21 -0.1
926,963 - LU632_RS04725 0.21 -1.7
926,963 - LU632_RS04725 0.21 -0.8
927,082 + LU632_RS04725 0.25 +0.3
927,088 + LU632_RS04725 0.25 +0.0
927,161 + LU632_RS04725 0.27 -0.7
927,187 + LU632_RS04725 0.28 +0.0
927,299 + LU632_RS04725 0.31 +0.8

Or see this region's nucleotide sequence