Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04665 and LU632_RS04670 are separated by 566 nucleotides LU632_RS04670 and LU632_RS04675 overlap by 4 nucleotides LU632_RS04675 and LU632_RS04680 are separated by 248 nucleotides
LU632_RS04665: LU632_RS04665 - IS3 family transposase, at 913,177 to 914,351
_RS04665
LU632_RS04670: LU632_RS04670 - conjugative transfer ATPase, at 914,918 to 916,131
_RS04670
LU632_RS04675: LU632_RS04675 - hypothetical protein, at 916,128 to 916,532
_RS04675
LU632_RS04680: LU632_RS04680 - IS481 family transposase, at 916,781 to 917,689
_RS04680
Position (kb) 914
915
916
917 Strain fitness (log2 ratio) -1
0
1 at 914.410 kb on + strand at 914.431 kb on + strand at 914.432 kb on - strand at 914.481 kb on - strand at 914.529 kb on + strand at 914.614 kb on + strand at 914.615 kb on - strand at 914.616 kb on + strand at 914.616 kb on + strand at 914.616 kb on + strand at 914.617 kb on - strand at 914.671 kb on - strand at 914.671 kb on - strand at 914.671 kb on - strand at 914.711 kb on - strand at 914.888 kb on + strand at 916.721 kb on + strand at 916.722 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 914,410 + +0.9 914,431 + +0.7 914,432 - -0.5 914,481 - -0.0 914,529 + +0.7 914,614 + -1.5 914,615 - +0.5 914,616 + -0.4 914,616 + -0.4 914,616 + -0.9 914,617 - +0.2 914,671 - -0.1 914,671 - -0.6 914,671 - -1.2 914,711 - +0.1 914,888 + -0.1 916,721 + -0.2 916,722 - -0.1
Or see this region's nucleotide sequence