Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04440 and LU632_RS04445 are separated by 65 nucleotides LU632_RS04445 and LU632_RS04450 are separated by 110 nucleotides LU632_RS04450 and LU632_RS04455 are separated by 2 nucleotides LU632_RS04455 and LU632_RS04460 are separated by 209 nucleotides LU632_RS04460 and LU632_RS04465 overlap by 24 nucleotides
LU632_RS04440: LU632_RS04440 - IS481 family transposase, at 877,256 to 878,296
_RS04440
LU632_RS04445: LU632_RS04445 - hypothetical protein, at 878,362 to 878,622
_RS04445
LU632_RS04450: LU632_RS04450 - SprT-like domain-containing protein, at 878,733 to 879,551
_RS04450
LU632_RS04455: LU632_RS04455 - antirestriction protein ArdR, at 879,554 to 879,787
_RS04455
LU632_RS04460: LU632_RS04460 - hypothetical protein, at 879,997 to 880,455
_RS04460
LU632_RS04465: LU632_RS04465 - helix-turn-helix domain-containing protein, at 880,432 to 880,548
_RS04465
Position (kb) 878
879
880 Strain fitness (log2 ratio) -2
-1
0
1 at 878.486 kb on - strand, within LU632_RS04445 at 878.486 kb on - strand, within LU632_RS04445 at 878.613 kb on - strand at 878.613 kb on - strand at 878.877 kb on - strand, within LU632_RS04450 at 879.288 kb on - strand, within LU632_RS04450 at 879.288 kb on - strand, within LU632_RS04450 at 879.527 kb on - strand at 879.622 kb on + strand, within LU632_RS04455 at 879.622 kb on + strand, within LU632_RS04455 at 879.625 kb on + strand, within LU632_RS04455 at 879.697 kb on - strand, within LU632_RS04455 at 879.714 kb on - strand, within LU632_RS04455 at 879.715 kb on + strand, within LU632_RS04455 at 879.762 kb on - strand, within LU632_RS04455 at 879.788 kb on - strand at 879.794 kb on - strand at 879.828 kb on - strand at 880.138 kb on + strand, within LU632_RS04460 at 880.234 kb on - strand, within LU632_RS04460 at 880.279 kb on + strand, within LU632_RS04460 at 880.280 kb on - strand, within LU632_RS04460 at 880.340 kb on + strand, within LU632_RS04460 at 880.379 kb on + strand, within LU632_RS04460 at 880.380 kb on - strand, within LU632_RS04460 at 880.409 kb on - strand, within LU632_RS04460 at 880.414 kb on - strand at 880.414 kb on - strand at 880.416 kb on + strand at 880.417 kb on - strand at 880.521 kb on + strand, within LU632_RS04465
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 878,486 - LU632_RS04445 0.48 -0.6 878,486 - LU632_RS04445 0.48 -0.3 878,613 - +0.1 878,613 - -0.3 878,877 - LU632_RS04450 0.18 -2.0 879,288 - LU632_RS04450 0.68 -1.2 879,288 - LU632_RS04450 0.68 -0.6 879,527 - -0.1 879,622 + LU632_RS04455 0.29 +0.4 879,622 + LU632_RS04455 0.29 -1.1 879,625 + LU632_RS04455 0.30 +1.1 879,697 - LU632_RS04455 0.61 +0.1 879,714 - LU632_RS04455 0.68 +0.1 879,715 + LU632_RS04455 0.69 -1.9 879,762 - LU632_RS04455 0.89 -0.2 879,788 - +0.7 879,794 - +1.1 879,828 - -0.2 880,138 + LU632_RS04460 0.31 -0.1 880,234 - LU632_RS04460 0.52 -1.1 880,279 + LU632_RS04460 0.61 -0.5 880,280 - LU632_RS04460 0.62 -0.3 880,340 + LU632_RS04460 0.75 -0.7 880,379 + LU632_RS04460 0.83 -0.7 880,380 - LU632_RS04460 0.83 -0.3 880,409 - LU632_RS04460 0.90 +0.4 880,414 - +0.0 880,414 - +0.2 880,416 + +0.4 880,417 - +0.3 880,521 + LU632_RS04465 0.76 -0.2
Or see this region's nucleotide sequence