Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03400 and LU632_RS03405 are separated by 9 nucleotides LU632_RS03405 and LU632_RS03410 are separated by 129 nucleotides LU632_RS03410 and LU632_RS03415 are separated by 8 nucleotides LU632_RS03415 and LU632_RS03420 are separated by 178 nucleotides
LU632_RS03400: LU632_RS03400 - integrase family protein, at 696,173 to 697,573
_RS03400
LU632_RS03405: LU632_RS03405 - hypothetical protein, at 697,583 to 698,206
_RS03405
LU632_RS03410: LU632_RS03410 - helix-turn-helix domain-containing protein, at 698,336 to 698,536
_RS03410
LU632_RS03415: LU632_RS03415 - hypothetical protein, at 698,545 to 698,988
_RS03415
LU632_RS03420: LU632_RS03420 - hypothetical protein, at 699,167 to 699,355
_RS03420
Position (kb) 697
698
699 Strain fitness (log2 ratio) -2
-1
0
1
2 at 696.603 kb on + strand, within LU632_RS03400 at 696.604 kb on - strand, within LU632_RS03400 at 696.604 kb on - strand, within LU632_RS03400 at 696.604 kb on - strand, within LU632_RS03400 at 696.632 kb on - strand, within LU632_RS03400 at 696.741 kb on + strand, within LU632_RS03400 at 696.742 kb on - strand, within LU632_RS03400 at 696.749 kb on + strand, within LU632_RS03400 at 696.783 kb on + strand, within LU632_RS03400 at 696.821 kb on - strand, within LU632_RS03400 at 696.904 kb on + strand, within LU632_RS03400 at 696.931 kb on + strand, within LU632_RS03400 at 696.948 kb on + strand, within LU632_RS03400 at 696.949 kb on - strand, within LU632_RS03400 at 696.954 kb on + strand, within LU632_RS03400 at 696.955 kb on - strand, within LU632_RS03400 at 696.955 kb on - strand, within LU632_RS03400 at 696.955 kb on - strand, within LU632_RS03400 at 696.955 kb on - strand, within LU632_RS03400 at 697.035 kb on + strand, within LU632_RS03400 at 697.036 kb on - strand, within LU632_RS03400 at 697.095 kb on + strand, within LU632_RS03400 at 697.095 kb on + strand, within LU632_RS03400 at 697.110 kb on - strand, within LU632_RS03400 at 697.117 kb on - strand, within LU632_RS03400 at 697.157 kb on + strand, within LU632_RS03400 at 697.235 kb on + strand, within LU632_RS03400 at 697.236 kb on - strand, within LU632_RS03400 at 697.236 kb on - strand, within LU632_RS03400 at 697.238 kb on - strand, within LU632_RS03400 at 697.238 kb on - strand, within LU632_RS03400 at 697.264 kb on + strand, within LU632_RS03400 at 697.285 kb on + strand, within LU632_RS03400 at 697.285 kb on + strand, within LU632_RS03400 at 697.286 kb on - strand, within LU632_RS03400 at 697.289 kb on + strand, within LU632_RS03400 at 697.289 kb on + strand, within LU632_RS03400 at 697.290 kb on - strand, within LU632_RS03400 at 697.290 kb on - strand, within LU632_RS03400 at 697.325 kb on + strand, within LU632_RS03400 at 697.326 kb on - strand, within LU632_RS03400 at 697.343 kb on - strand, within LU632_RS03400 at 697.343 kb on - strand, within LU632_RS03400 at 697.385 kb on + strand, within LU632_RS03400 at 697.386 kb on - strand, within LU632_RS03400 at 697.582 kb on + strand at 697.725 kb on + strand, within LU632_RS03405 at 697.827 kb on + strand, within LU632_RS03405 at 697.828 kb on - strand, within LU632_RS03405 at 697.991 kb on - strand, within LU632_RS03405 at 698.242 kb on + strand at 698.247 kb on - strand at 698.253 kb on + strand at 698.260 kb on + strand at 698.261 kb on - strand at 698.261 kb on - strand at 698.262 kb on + strand at 698.262 kb on + strand at 698.263 kb on - strand at 698.264 kb on + strand at 698.265 kb on - strand at 698.271 kb on + strand at 698.320 kb on - strand at 698.336 kb on - strand at 698.344 kb on - strand at 698.347 kb on - strand at 698.354 kb on - strand at 698.448 kb on - strand, within LU632_RS03410 at 698.484 kb on - strand, within LU632_RS03410 at 698.484 kb on - strand, within LU632_RS03410 at 698.508 kb on - strand, within LU632_RS03410 at 698.508 kb on - strand, within LU632_RS03410 at 698.508 kb on - strand, within LU632_RS03410 at 698.680 kb on + strand, within LU632_RS03415 at 698.682 kb on + strand, within LU632_RS03415 at 698.683 kb on - strand, within LU632_RS03415 at 698.683 kb on - strand, within LU632_RS03415 at 698.758 kb on + strand, within LU632_RS03415 at 699.045 kb on + strand at 699.045 kb on + strand at 699.045 kb on + strand at 699.090 kb on + strand at 699.140 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 696,603 + LU632_RS03400 0.31 -0.3 696,604 - LU632_RS03400 0.31 -0.1 696,604 - LU632_RS03400 0.31 -0.1 696,604 - LU632_RS03400 0.31 -0.1 696,632 - LU632_RS03400 0.33 -0.8 696,741 + LU632_RS03400 0.41 -0.2 696,742 - LU632_RS03400 0.41 +0.8 696,749 + LU632_RS03400 0.41 +0.8 696,783 + LU632_RS03400 0.44 -0.8 696,821 - LU632_RS03400 0.46 +1.2 696,904 + LU632_RS03400 0.52 +0.5 696,931 + LU632_RS03400 0.54 +0.1 696,948 + LU632_RS03400 0.55 -0.2 696,949 - LU632_RS03400 0.55 -0.9 696,954 + LU632_RS03400 0.56 +0.3 696,955 - LU632_RS03400 0.56 -0.3 696,955 - LU632_RS03400 0.56 +0.9 696,955 - LU632_RS03400 0.56 +0.2 696,955 - LU632_RS03400 0.56 +0.2 697,035 + LU632_RS03400 0.62 +0.2 697,036 - LU632_RS03400 0.62 +0.4 697,095 + LU632_RS03400 0.66 -0.4 697,095 + LU632_RS03400 0.66 -0.2 697,110 - LU632_RS03400 0.67 +0.7 697,117 - LU632_RS03400 0.67 -0.2 697,157 + LU632_RS03400 0.70 -0.3 697,235 + LU632_RS03400 0.76 +0.3 697,236 - LU632_RS03400 0.76 -0.2 697,236 - LU632_RS03400 0.76 -1.8 697,238 - LU632_RS03400 0.76 -0.0 697,238 - LU632_RS03400 0.76 -1.7 697,264 + LU632_RS03400 0.78 -0.7 697,285 + LU632_RS03400 0.79 +2.2 697,285 + LU632_RS03400 0.79 +0.8 697,286 - LU632_RS03400 0.79 +0.2 697,289 + LU632_RS03400 0.80 +1.5 697,289 + LU632_RS03400 0.80 -1.3 697,290 - LU632_RS03400 0.80 -0.3 697,290 - LU632_RS03400 0.80 +0.4 697,325 + LU632_RS03400 0.82 +0.3 697,326 - LU632_RS03400 0.82 -0.2 697,343 - LU632_RS03400 0.84 +0.2 697,343 - LU632_RS03400 0.84 -0.1 697,385 + LU632_RS03400 0.87 -0.4 697,386 - LU632_RS03400 0.87 +1.4 697,582 + -0.6 697,725 + LU632_RS03405 0.23 +0.2 697,827 + LU632_RS03405 0.39 +1.1 697,828 - LU632_RS03405 0.39 +0.8 697,991 - LU632_RS03405 0.65 -0.8 698,242 + +1.3 698,247 - +0.2 698,253 + -0.0 698,260 + -0.6 698,261 - -0.8 698,261 - +0.0 698,262 + +0.3 698,262 + -0.3 698,263 - +0.2 698,264 + +0.1 698,265 - +0.7 698,271 + -0.8 698,320 - -0.8 698,336 - -0.6 698,344 - -1.6 698,347 - +0.3 698,354 - -2.5 698,448 - LU632_RS03410 0.56 +0.3 698,484 - LU632_RS03410 0.74 +1.2 698,484 - LU632_RS03410 0.74 +0.3 698,508 - LU632_RS03410 0.86 -0.1 698,508 - LU632_RS03410 0.86 -0.2 698,508 - LU632_RS03410 0.86 -0.0 698,680 + LU632_RS03415 0.30 +0.9 698,682 + LU632_RS03415 0.31 +0.4 698,683 - LU632_RS03415 0.31 +0.1 698,683 - LU632_RS03415 0.31 +1.1 698,758 + LU632_RS03415 0.48 -0.8 699,045 + -0.2 699,045 + -0.3 699,045 + +0.1 699,090 + -0.3 699,140 + -1.2
Or see this region's nucleotide sequence