Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sgrR and LU632_RS02845 are separated by 261 nucleotides LU632_RS02845 and LU632_RS02850 are separated by 127 nucleotides LU632_RS02850 and LU632_RS02855 are separated by 152 nucleotides
LU632_RS02840: sgrR - HTH-type transcriptional regulator SgrR, at 578,079 to 579,740
sgrR
LU632_RS02845: LU632_RS02845 - MFS transporter, at 580,002 to 581,180
_RS02845
LU632_RS02850: LU632_RS02850 - hypothetical protein, at 581,308 to 581,478
_RS02850
LU632_RS02855: LU632_RS02855 - hypothetical protein, at 581,631 to 581,990
_RS02855
Position (kb) 580
581
582 Strain fitness (log2 ratio) -2
-1
0
1
2 at 579.049 kb on + strand, within sgrR at 579.049 kb on + strand, within sgrR at 579.050 kb on - strand, within sgrR at 579.050 kb on - strand, within sgrR at 579.054 kb on - strand, within sgrR at 579.054 kb on - strand, within sgrR at 579.087 kb on - strand, within sgrR at 579.101 kb on - strand, within sgrR at 579.269 kb on + strand, within sgrR at 579.269 kb on + strand, within sgrR at 579.365 kb on - strand, within sgrR at 579.624 kb on - strand at 579.785 kb on + strand at 579.785 kb on + strand at 579.786 kb on - strand at 579.786 kb on - strand at 579.849 kb on + strand at 579.897 kb on + strand at 579.958 kb on + strand at 579.967 kb on + strand at 579.967 kb on + strand at 580.056 kb on - strand at 580.071 kb on - strand at 580.167 kb on - strand, within LU632_RS02845 at 580.361 kb on + strand, within LU632_RS02845 at 580.362 kb on - strand, within LU632_RS02845 at 580.436 kb on + strand, within LU632_RS02845 at 580.437 kb on - strand, within LU632_RS02845 at 580.504 kb on - strand, within LU632_RS02845 at 580.661 kb on - strand, within LU632_RS02845 at 580.692 kb on - strand, within LU632_RS02845 at 580.765 kb on + strand, within LU632_RS02845 at 580.821 kb on + strand, within LU632_RS02845 at 580.848 kb on - strand, within LU632_RS02845 at 580.848 kb on - strand, within LU632_RS02845 at 580.928 kb on - strand, within LU632_RS02845 at 580.930 kb on + strand, within LU632_RS02845 at 580.930 kb on + strand, within LU632_RS02845 at 580.996 kb on + strand, within LU632_RS02845 at 581.214 kb on + strand at 581.214 kb on + strand at 581.214 kb on + strand at 581.214 kb on + strand at 581.215 kb on - strand at 581.215 kb on - strand at 581.215 kb on - strand at 581.215 kb on - strand at 581.215 kb on - strand at 581.262 kb on + strand at 581.278 kb on + strand at 581.278 kb on + strand at 581.278 kb on + strand at 581.278 kb on + strand at 581.279 kb on - strand at 581.282 kb on + strand at 581.282 kb on + strand at 581.282 kb on + strand at 581.282 kb on + strand at 581.283 kb on - strand at 581.283 kb on - strand at 581.283 kb on - strand at 581.283 kb on - strand at 581.427 kb on + strand, within LU632_RS02850 at 581.476 kb on + strand at 581.476 kb on + strand at 581.476 kb on + strand at 581.530 kb on - strand at 581.530 kb on - strand at 581.583 kb on + strand at 581.583 kb on + strand at 581.584 kb on - strand at 581.584 kb on - strand at 581.584 kb on - strand at 581.584 kb on - strand at 581.822 kb on + strand, within LU632_RS02855 at 581.822 kb on + strand, within LU632_RS02855 at 581.822 kb on + strand, within LU632_RS02855 at 581.822 kb on + strand, within LU632_RS02855 at 581.906 kb on + strand, within LU632_RS02855 at 581.907 kb on - strand, within LU632_RS02855 at 581.912 kb on + strand, within LU632_RS02855 at 581.913 kb on - strand, within LU632_RS02855 at 581.913 kb on - strand, within LU632_RS02855 at 582.018 kb on + strand at 582.018 kb on + strand at 582.018 kb on + strand at 582.018 kb on + strand at 582.019 kb on - strand at 582.024 kb on + strand at 582.024 kb on + strand at 582.025 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 579,049 + sgrR LU632_RS02840 0.58 -1.1 579,049 + sgrR LU632_RS02840 0.58 -0.1 579,050 - sgrR LU632_RS02840 0.58 -1.1 579,050 - sgrR LU632_RS02840 0.58 +0.2 579,054 - sgrR LU632_RS02840 0.59 -0.8 579,054 - sgrR LU632_RS02840 0.59 +0.6 579,087 - sgrR LU632_RS02840 0.61 +0.1 579,101 - sgrR LU632_RS02840 0.61 -2.0 579,269 + sgrR LU632_RS02840 0.72 -0.0 579,269 + sgrR LU632_RS02840 0.72 -0.3 579,365 - sgrR LU632_RS02840 0.77 -0.5 579,624 - +0.3 579,785 + -0.1 579,785 + -0.5 579,786 - -0.6 579,786 - -0.0 579,849 + -0.7 579,897 + -0.1 579,958 + -0.6 579,967 + -1.1 579,967 + -0.1 580,056 - +0.2 580,071 - -0.3 580,167 - LU632_RS02845 0.14 +1.1 580,361 + LU632_RS02845 0.30 +0.9 580,362 - LU632_RS02845 0.31 +0.1 580,436 + LU632_RS02845 0.37 -1.6 580,437 - LU632_RS02845 0.37 +0.8 580,504 - LU632_RS02845 0.43 +2.2 580,661 - LU632_RS02845 0.56 +0.7 580,692 - LU632_RS02845 0.59 -0.0 580,765 + LU632_RS02845 0.65 -0.2 580,821 + LU632_RS02845 0.69 -1.1 580,848 - LU632_RS02845 0.72 -0.1 580,848 - LU632_RS02845 0.72 -0.3 580,928 - LU632_RS02845 0.79 +0.2 580,930 + LU632_RS02845 0.79 -0.0 580,930 + LU632_RS02845 0.79 +0.3 580,996 + LU632_RS02845 0.84 -0.5 581,214 + -0.1 581,214 + -0.4 581,214 + -1.1 581,214 + -0.5 581,215 - -0.7 581,215 - +0.8 581,215 - +0.7 581,215 - +0.6 581,215 - -0.1 581,262 + -0.8 581,278 + +0.1 581,278 + -0.7 581,278 + +0.0 581,278 + -0.2 581,279 - -0.1 581,282 + +0.3 581,282 + +0.6 581,282 + +0.2 581,282 + -0.8 581,283 - +0.1 581,283 - +0.2 581,283 - +0.4 581,283 - -1.3 581,427 + LU632_RS02850 0.70 -2.3 581,476 + -1.8 581,476 + -0.1 581,476 + -0.2 581,530 - -0.5 581,530 - +0.7 581,583 + -1.2 581,583 + -0.8 581,584 - -0.4 581,584 - +0.1 581,584 - -0.8 581,584 - -0.7 581,822 + LU632_RS02855 0.53 -0.5 581,822 + LU632_RS02855 0.53 +0.9 581,822 + LU632_RS02855 0.53 +0.8 581,822 + LU632_RS02855 0.53 -0.4 581,906 + LU632_RS02855 0.76 +0.6 581,907 - LU632_RS02855 0.77 +0.4 581,912 + LU632_RS02855 0.78 -0.1 581,913 - LU632_RS02855 0.78 +0.6 581,913 - LU632_RS02855 0.78 -0.9 582,018 + +0.5 582,018 + +0.0 582,018 + -1.5 582,018 + +0.1 582,019 - -0.6 582,024 + +0.4 582,024 + +0.1 582,025 - +0.8
Or see this region's nucleotide sequence