Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02505 and LU632_RS02510 overlap by 4 nucleotides LU632_RS02510 and deoC are separated by 274 nucleotides
LU632_RS02505: LU632_RS02505 - DUF6363 domain-containing protein, at 497,380 to 498,342
_RS02505
LU632_RS02510: LU632_RS02510 - TatD family hydrolase, at 498,339 to 499,115
_RS02510
LU632_RS02515: deoC - deoxyribose-phosphate aldolase, at 499,390 to 500,169
deoC
Position (kb) 498
499
500 Strain fitness (log2 ratio) -2
-1
0
1
2 at 497.389 kb on + strand at 497.389 kb on + strand at 497.389 kb on + strand at 497.389 kb on + strand at 497.389 kb on + strand at 497.389 kb on + strand at 497.390 kb on - strand at 497.391 kb on + strand at 497.392 kb on - strand at 497.587 kb on + strand, within LU632_RS02505 at 497.589 kb on + strand, within LU632_RS02505 at 497.589 kb on + strand, within LU632_RS02505 at 497.607 kb on + strand, within LU632_RS02505 at 497.609 kb on + strand, within LU632_RS02505 at 497.610 kb on - strand, within LU632_RS02505 at 497.610 kb on - strand, within LU632_RS02505 at 497.610 kb on - strand, within LU632_RS02505 at 497.740 kb on + strand, within LU632_RS02505 at 497.806 kb on + strand, within LU632_RS02505 at 497.806 kb on + strand, within LU632_RS02505 at 497.806 kb on + strand, within LU632_RS02505 at 497.806 kb on + strand, within LU632_RS02505 at 497.806 kb on + strand, within LU632_RS02505 at 497.807 kb on - strand, within LU632_RS02505 at 497.807 kb on - strand, within LU632_RS02505 at 498.009 kb on + strand, within LU632_RS02505 at 498.010 kb on - strand, within LU632_RS02505 at 498.034 kb on + strand, within LU632_RS02505 at 498.035 kb on - strand, within LU632_RS02505 at 498.035 kb on - strand, within LU632_RS02505 at 498.055 kb on - strand, within LU632_RS02505 at 498.118 kb on - strand, within LU632_RS02505 at 498.118 kb on - strand, within LU632_RS02505 at 498.118 kb on - strand, within LU632_RS02505 at 498.158 kb on - strand, within LU632_RS02505 at 498.281 kb on + strand at 498.282 kb on - strand at 498.282 kb on - strand at 498.320 kb on - strand at 498.516 kb on + strand, within LU632_RS02510 at 498.555 kb on + strand, within LU632_RS02510 at 498.588 kb on + strand, within LU632_RS02510 at 498.588 kb on + strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.590 kb on + strand, within LU632_RS02510 at 498.591 kb on - strand, within LU632_RS02510 at 498.721 kb on + strand, within LU632_RS02510 at 498.722 kb on - strand, within LU632_RS02510 at 498.722 kb on - strand, within LU632_RS02510 at 498.889 kb on - strand, within LU632_RS02510 at 499.092 kb on - strand at 499.109 kb on + strand at 499.110 kb on - strand at 499.209 kb on + strand at 499.209 kb on + strand at 499.210 kb on - strand at 499.214 kb on + strand at 499.214 kb on + strand at 499.215 kb on - strand at 499.215 kb on - strand at 499.215 kb on - strand at 499.306 kb on + strand at 499.307 kb on - strand at 499.307 kb on - strand at 499.358 kb on + strand at 499.359 kb on - strand at 499.530 kb on + strand, within deoC at 499.530 kb on + strand, within deoC at 499.531 kb on - strand, within deoC at 499.531 kb on - strand, within deoC at 499.534 kb on + strand, within deoC at 499.884 kb on + strand, within deoC at 500.053 kb on - strand, within deoC
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 497,389 + +1.6 497,389 + -0.2 497,389 + -0.9 497,389 + +1.5 497,389 + -0.2 497,389 + -0.0 497,390 - -0.3 497,391 + -0.2 497,392 - -1.0 497,587 + LU632_RS02505 0.21 -0.7 497,589 + LU632_RS02505 0.22 +0.2 497,589 + LU632_RS02505 0.22 -0.6 497,607 + LU632_RS02505 0.24 -0.4 497,609 + LU632_RS02505 0.24 +0.6 497,610 - LU632_RS02505 0.24 -0.1 497,610 - LU632_RS02505 0.24 -0.0 497,610 - LU632_RS02505 0.24 -0.5 497,740 + LU632_RS02505 0.37 -0.0 497,806 + LU632_RS02505 0.44 -0.9 497,806 + LU632_RS02505 0.44 +0.4 497,806 + LU632_RS02505 0.44 +0.1 497,806 + LU632_RS02505 0.44 +1.8 497,806 + LU632_RS02505 0.44 -0.0 497,807 - LU632_RS02505 0.44 -0.0 497,807 - LU632_RS02505 0.44 +0.1 498,009 + LU632_RS02505 0.65 -0.4 498,010 - LU632_RS02505 0.65 -0.4 498,034 + LU632_RS02505 0.68 -0.2 498,035 - LU632_RS02505 0.68 +1.5 498,035 - LU632_RS02505 0.68 +0.4 498,055 - LU632_RS02505 0.70 -1.9 498,118 - LU632_RS02505 0.77 -0.2 498,118 - LU632_RS02505 0.77 -0.2 498,118 - LU632_RS02505 0.77 -0.3 498,158 - LU632_RS02505 0.81 -0.1 498,281 + +2.7 498,282 - -0.3 498,282 - +0.3 498,320 - +0.6 498,516 + LU632_RS02510 0.23 -0.4 498,555 + LU632_RS02510 0.28 +0.3 498,588 + LU632_RS02510 0.32 -0.1 498,588 + LU632_RS02510 0.32 -0.2 498,589 - LU632_RS02510 0.32 -0.4 498,589 - LU632_RS02510 0.32 -0.5 498,589 - LU632_RS02510 0.32 -0.5 498,589 - LU632_RS02510 0.32 -0.8 498,589 - LU632_RS02510 0.32 -0.2 498,590 + LU632_RS02510 0.32 -0.4 498,591 - LU632_RS02510 0.32 -0.2 498,721 + LU632_RS02510 0.49 -0.8 498,722 - LU632_RS02510 0.49 +0.1 498,722 - LU632_RS02510 0.49 -0.1 498,889 - LU632_RS02510 0.71 -0.5 499,092 - +0.1 499,109 + +0.3 499,110 - +0.4 499,209 + -0.1 499,209 + +0.4 499,210 - -1.4 499,214 + -0.7 499,214 + -0.5 499,215 - -1.4 499,215 - -0.3 499,215 - -0.3 499,306 + +0.1 499,307 - -0.4 499,307 - -0.3 499,358 + -0.2 499,359 - -0.6 499,530 + deoC LU632_RS02515 0.18 +0.2 499,530 + deoC LU632_RS02515 0.18 +0.0 499,531 - deoC LU632_RS02515 0.18 -0.5 499,531 - deoC LU632_RS02515 0.18 +0.1 499,534 + deoC LU632_RS02515 0.18 -0.0 499,884 + deoC LU632_RS02515 0.63 -1.0 500,053 - deoC LU632_RS02515 0.85 -1.4
Or see this region's nucleotide sequence