Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS02500

Experiment: HBM-Sucrose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS02495 and LU632_RS02500 are separated by 245 nucleotidesLU632_RS02500 and LU632_RS02505 are separated by 185 nucleotides LU632_RS02495: LU632_RS02495 - IS256 family transposase, at 495,118 to 496,326 _RS02495 LU632_RS02500: LU632_RS02500 - DDE-type integrase/transposase/recombinase, at 496,572 to 497,194 _RS02500 LU632_RS02505: LU632_RS02505 - DUF6363 domain-containing protein, at 497,380 to 498,342 _RS02505 Position (kb) 496 497 498Strain fitness (log2 ratio) -2 -1 0 1 2at 496.038 kb on - strand, within LU632_RS02495at 496.352 kb on + strandat 496.352 kb on + strandat 496.433 kb on + strandat 496.434 kb on - strandat 496.434 kb on - strandat 496.435 kb on + strandat 496.435 kb on + strandat 496.436 kb on - strandat 496.436 kb on - strandat 496.436 kb on - strandat 496.436 kb on - strandat 496.511 kb on + strandat 496.689 kb on + strand, within LU632_RS02500at 496.689 kb on + strand, within LU632_RS02500at 496.689 kb on + strand, within LU632_RS02500at 496.689 kb on + strand, within LU632_RS02500at 496.689 kb on + strand, within LU632_RS02500at 496.690 kb on - strand, within LU632_RS02500at 496.690 kb on - strand, within LU632_RS02500at 496.690 kb on - strand, within LU632_RS02500at 496.690 kb on - strand, within LU632_RS02500at 496.690 kb on - strand, within LU632_RS02500at 496.709 kb on - strand, within LU632_RS02500at 496.979 kb on - strand, within LU632_RS02500at 497.052 kb on + strand, within LU632_RS02500at 497.052 kb on + strand, within LU632_RS02500at 497.052 kb on + strand, within LU632_RS02500at 497.053 kb on - strand, within LU632_RS02500at 497.083 kb on + strand, within LU632_RS02500at 497.083 kb on + strand, within LU632_RS02500at 497.083 kb on + strand, within LU632_RS02500at 497.084 kb on - strand, within LU632_RS02500at 497.084 kb on - strand, within LU632_RS02500at 497.084 kb on - strand, within LU632_RS02500at 497.085 kb on + strand, within LU632_RS02500at 497.086 kb on - strand, within LU632_RS02500at 497.086 kb on - strand, within LU632_RS02500at 497.086 kb on - strand, within LU632_RS02500at 497.160 kb on + strandat 497.160 kb on + strandat 497.160 kb on + strandat 497.160 kb on + strandat 497.161 kb on - strandat 497.177 kb on + strandat 497.191 kb on + strandat 497.222 kb on + strandat 497.223 kb on - strandat 497.253 kb on - strandat 497.299 kb on + strandat 497.299 kb on + strandat 497.299 kb on + strandat 497.300 kb on - strandat 497.389 kb on + strandat 497.389 kb on + strandat 497.389 kb on + strandat 497.389 kb on + strandat 497.389 kb on + strandat 497.389 kb on + strandat 497.390 kb on - strandat 497.391 kb on + strandat 497.392 kb on - strandat 497.587 kb on + strand, within LU632_RS02505at 497.589 kb on + strand, within LU632_RS02505at 497.589 kb on + strand, within LU632_RS02505at 497.607 kb on + strand, within LU632_RS02505at 497.609 kb on + strand, within LU632_RS02505at 497.610 kb on - strand, within LU632_RS02505at 497.610 kb on - strand, within LU632_RS02505at 497.610 kb on - strand, within LU632_RS02505at 497.740 kb on + strand, within LU632_RS02505at 497.806 kb on + strand, within LU632_RS02505at 497.806 kb on + strand, within LU632_RS02505at 497.806 kb on + strand, within LU632_RS02505at 497.806 kb on + strand, within LU632_RS02505at 497.806 kb on + strand, within LU632_RS02505at 497.807 kb on - strand, within LU632_RS02505at 497.807 kb on - strand, within LU632_RS02505at 498.009 kb on + strand, within LU632_RS02505at 498.010 kb on - strand, within LU632_RS02505at 498.034 kb on + strand, within LU632_RS02505at 498.035 kb on - strand, within LU632_RS02505at 498.035 kb on - strand, within LU632_RS02505at 498.055 kb on - strand, within LU632_RS02505at 498.118 kb on - strand, within LU632_RS02505at 498.118 kb on - strand, within LU632_RS02505at 498.118 kb on - strand, within LU632_RS02505at 498.158 kb on - strand, within LU632_RS02505

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Sucrose
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496,038 - LU632_RS02495 0.76 +1.5
496,352 + +0.0
496,352 + -0.4
496,433 + -0.4
496,434 - +0.0
496,434 - +0.3
496,435 + -0.4
496,435 + +0.1
496,436 - -0.5
496,436 - -0.8
496,436 - -0.3
496,436 - +0.1
496,511 + -0.2
496,689 + LU632_RS02500 0.19 +0.4
496,689 + LU632_RS02500 0.19 +1.2
496,689 + LU632_RS02500 0.19 +0.6
496,689 + LU632_RS02500 0.19 +0.2
496,689 + LU632_RS02500 0.19 -0.4
496,690 - LU632_RS02500 0.19 +0.0
496,690 - LU632_RS02500 0.19 -0.2
496,690 - LU632_RS02500 0.19 +1.6
496,690 - LU632_RS02500 0.19 -0.9
496,690 - LU632_RS02500 0.19 +0.1
496,709 - LU632_RS02500 0.22 -1.1
496,979 - LU632_RS02500 0.65 +1.5
497,052 + LU632_RS02500 0.77 +1.2
497,052 + LU632_RS02500 0.77 +0.9
497,052 + LU632_RS02500 0.77 -0.1
497,053 - LU632_RS02500 0.77 -0.7
497,083 + LU632_RS02500 0.82 -0.1
497,083 + LU632_RS02500 0.82 +0.7
497,083 + LU632_RS02500 0.82 +1.2
497,084 - LU632_RS02500 0.82 -0.1
497,084 - LU632_RS02500 0.82 -0.3
497,084 - LU632_RS02500 0.82 -0.6
497,085 + LU632_RS02500 0.82 +0.8
497,086 - LU632_RS02500 0.83 -1.1
497,086 - LU632_RS02500 0.83 +0.9
497,086 - LU632_RS02500 0.83 -0.8
497,160 + -2.1
497,160 + +0.8
497,160 + -1.2
497,160 + -1.3
497,161 - +1.9
497,177 + +0.5
497,191 + +1.4
497,222 + +0.3
497,223 - -1.0
497,253 - +1.0
497,299 + -0.4
497,299 + -0.3
497,299 + -0.2
497,300 - -0.6
497,389 + +1.6
497,389 + -0.2
497,389 + -0.9
497,389 + +1.5
497,389 + -0.2
497,389 + -0.0
497,390 - -0.3
497,391 + -0.2
497,392 - -1.0
497,587 + LU632_RS02505 0.21 -0.7
497,589 + LU632_RS02505 0.22 +0.2
497,589 + LU632_RS02505 0.22 -0.6
497,607 + LU632_RS02505 0.24 -0.4
497,609 + LU632_RS02505 0.24 +0.6
497,610 - LU632_RS02505 0.24 -0.1
497,610 - LU632_RS02505 0.24 -0.0
497,610 - LU632_RS02505 0.24 -0.5
497,740 + LU632_RS02505 0.37 -0.0
497,806 + LU632_RS02505 0.44 -0.9
497,806 + LU632_RS02505 0.44 +0.4
497,806 + LU632_RS02505 0.44 +0.1
497,806 + LU632_RS02505 0.44 +1.8
497,806 + LU632_RS02505 0.44 -0.0
497,807 - LU632_RS02505 0.44 -0.0
497,807 - LU632_RS02505 0.44 +0.1
498,009 + LU632_RS02505 0.65 -0.4
498,010 - LU632_RS02505 0.65 -0.4
498,034 + LU632_RS02505 0.68 -0.2
498,035 - LU632_RS02505 0.68 +1.5
498,035 - LU632_RS02505 0.68 +0.4
498,055 - LU632_RS02505 0.70 -1.9
498,118 - LU632_RS02505 0.77 -0.2
498,118 - LU632_RS02505 0.77 -0.2
498,118 - LU632_RS02505 0.77 -0.3
498,158 - LU632_RS02505 0.81 -0.1

Or see this region's nucleotide sequence