Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02275 and LU632_RS02280 are separated by 230 nucleotides LU632_RS02280 and LU632_RS02285 overlap by 1 nucleotides LU632_RS02285 and LU632_RS02290 are separated by 2 nucleotides LU632_RS02290 and LU632_RS02295 are separated by 35 nucleotides LU632_RS02295 and mzrA are separated by 165 nucleotides
LU632_RS02275: LU632_RS02275 - DoxX family protein, at 449,912 to 450,304
_RS02275
LU632_RS02280: LU632_RS02280 - YqjK-like family protein, at 450,535 to 450,816
_RS02280
LU632_RS02285: LU632_RS02285 - phage holin family protein, at 450,816 to 451,208
_RS02285
LU632_RS02290: LU632_RS02290 - YqjD family protein, at 451,211 to 451,516
_RS02290
LU632_RS02295: LU632_RS02295 - DUF1090 domain-containing protein, at 451,552 to 451,926
_RS02295
LU632_RS02300: mzrA - EnvZ/OmpR regulon moderator MzrA, at 452,092 to 452,520
mzrA
LU632_RS02305: LU632_RS02305 - DedA family protein, at 452,490 to 453,152
_RS02305
Position (kb) 451
452 Strain fitness (log2 ratio) -1
0
1
2 at 450.299 kb on - strand at 450.308 kb on + strand at 450.368 kb on - strand at 450.551 kb on + strand at 450.574 kb on - strand, within LU632_RS02280 at 450.707 kb on + strand, within LU632_RS02280 at 450.802 kb on + strand at 450.802 kb on + strand at 450.802 kb on + strand at 450.803 kb on - strand at 450.803 kb on - strand at 450.832 kb on - strand at 450.849 kb on - strand at 450.982 kb on - strand, within LU632_RS02285 at 450.982 kb on - strand, within LU632_RS02285 at 450.982 kb on - strand, within LU632_RS02285 at 450.993 kb on - strand, within LU632_RS02285 at 450.995 kb on + strand, within LU632_RS02285 at 450.995 kb on + strand, within LU632_RS02285 at 450.996 kb on - strand, within LU632_RS02285 at 450.999 kb on + strand, within LU632_RS02285 at 451.029 kb on - strand, within LU632_RS02285 at 451.163 kb on + strand, within LU632_RS02285 at 451.313 kb on + strand, within LU632_RS02290 at 451.369 kb on + strand, within LU632_RS02290 at 451.443 kb on - strand, within LU632_RS02290 at 451.446 kb on - strand, within LU632_RS02290 at 451.516 kb on + strand at 451.516 kb on + strand at 451.516 kb on + strand at 451.516 kb on + strand at 451.516 kb on + strand at 451.520 kb on + strand at 451.521 kb on - strand at 451.521 kb on - strand at 451.528 kb on + strand at 451.528 kb on + strand at 451.529 kb on - strand at 451.532 kb on + strand at 451.681 kb on + strand, within LU632_RS02295 at 451.726 kb on + strand, within LU632_RS02295 at 451.783 kb on + strand, within LU632_RS02295 at 451.891 kb on - strand at 451.919 kb on + strand at 451.920 kb on - strand at 451.920 kb on - strand at 451.920 kb on - strand at 451.936 kb on + strand at 451.937 kb on - strand at 451.977 kb on + strand at 452.004 kb on - strand at 452.040 kb on + strand at 452.041 kb on - strand at 452.055 kb on + strand at 452.240 kb on - strand, within mzrA at 452.240 kb on - strand, within mzrA at 452.269 kb on - strand, within mzrA at 452.281 kb on + strand, within mzrA at 452.282 kb on - strand, within mzrA
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 450,299 - -0.5 450,308 + -0.8 450,368 - -0.3 450,551 + +0.0 450,574 - LU632_RS02280 0.14 +0.4 450,707 + LU632_RS02280 0.61 -0.1 450,802 + +0.0 450,802 + +0.3 450,802 + +0.6 450,803 - +0.2 450,803 - +1.2 450,832 - -0.3 450,849 - +0.9 450,982 - LU632_RS02285 0.42 +0.2 450,982 - LU632_RS02285 0.42 +0.7 450,982 - LU632_RS02285 0.42 -0.0 450,993 - LU632_RS02285 0.45 -0.1 450,995 + LU632_RS02285 0.46 +0.6 450,995 + LU632_RS02285 0.46 -0.2 450,996 - LU632_RS02285 0.46 -0.6 450,999 + LU632_RS02285 0.47 +0.2 451,029 - LU632_RS02285 0.54 +0.1 451,163 + LU632_RS02285 0.88 -0.2 451,313 + LU632_RS02290 0.33 -1.2 451,369 + LU632_RS02290 0.52 -0.9 451,443 - LU632_RS02290 0.76 +0.6 451,446 - LU632_RS02290 0.77 +0.6 451,516 + +1.2 451,516 + +0.2 451,516 + -1.1 451,516 + +2.0 451,516 + +0.0 451,520 + +0.5 451,521 - -0.3 451,521 - -1.0 451,528 + +0.5 451,528 + +0.1 451,529 - -0.2 451,532 + -1.6 451,681 + LU632_RS02295 0.34 -0.4 451,726 + LU632_RS02295 0.46 +0.9 451,783 + LU632_RS02295 0.62 -0.1 451,891 - +0.1 451,919 + +0.5 451,920 - +0.2 451,920 - -0.5 451,920 - -0.1 451,936 + -0.9 451,937 - -0.1 451,977 + +0.6 452,004 - +0.5 452,040 + -1.4 452,041 - +0.8 452,055 + +0.6 452,240 - mzrA LU632_RS02300 0.34 -0.9 452,240 - mzrA LU632_RS02300 0.34 -0.3 452,269 - mzrA LU632_RS02300 0.41 -1.4 452,281 + mzrA LU632_RS02300 0.44 +0.0 452,282 - mzrA LU632_RS02300 0.44 -0.1
Or see this region's nucleotide sequence