Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02020 and LU632_RS02025 are separated by 207 nucleotides LU632_RS02025 and nnr overlap by 4 nucleotides
LU632_RS02020: LU632_RS02020 - hypothetical protein, at 396,835 to 397,008
_RS02020
LU632_RS02025: LU632_RS02025 - hypothetical protein, at 397,216 to 397,404
_RS02025
LU632_RS02030: nnr - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 397,401 to 398,921
nnr
Position (kb) 397
398 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 396.329 kb on - strand at 396.336 kb on + strand at 396.336 kb on + strand at 396.423 kb on + strand at 396.454 kb on - strand at 396.454 kb on - strand at 396.454 kb on - strand at 396.516 kb on - strand at 396.573 kb on + strand at 396.574 kb on - strand at 396.651 kb on + strand at 396.709 kb on + strand at 396.710 kb on - strand at 396.728 kb on - strand at 396.728 kb on - strand at 396.752 kb on + strand at 396.858 kb on + strand, within LU632_RS02020 at 397.043 kb on + strand at 397.075 kb on - strand at 397.075 kb on - strand at 397.107 kb on + strand at 397.107 kb on + strand at 397.108 kb on - strand at 397.110 kb on + strand at 397.110 kb on + strand at 397.111 kb on - strand at 397.120 kb on + strand at 397.250 kb on - strand, within LU632_RS02025 at 397.278 kb on + strand, within LU632_RS02025 at 397.278 kb on + strand, within LU632_RS02025 at 397.318 kb on + strand, within LU632_RS02025 at 397.318 kb on + strand, within LU632_RS02025 at 397.319 kb on - strand, within LU632_RS02025 at 397.319 kb on - strand, within LU632_RS02025 at 397.319 kb on - strand, within LU632_RS02025 at 397.324 kb on + strand, within LU632_RS02025 at 397.324 kb on + strand, within LU632_RS02025 at 397.324 kb on + strand, within LU632_RS02025 at 397.459 kb on + strand at 397.469 kb on - strand at 397.515 kb on + strand at 397.515 kb on + strand at 397.516 kb on - strand at 397.516 kb on - strand at 397.516 kb on - strand at 397.592 kb on - strand, within nnr at 397.694 kb on + strand, within nnr at 397.979 kb on + strand, within nnr at 397.981 kb on + strand, within nnr at 397.982 kb on - strand, within nnr at 398.022 kb on + strand, within nnr at 398.022 kb on + strand, within nnr at 398.023 kb on - strand, within nnr at 398.040 kb on + strand, within nnr at 398.177 kb on + strand, within nnr at 398.179 kb on + strand, within nnr at 398.180 kb on - strand, within nnr at 398.330 kb on + strand, within nnr
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 396,329 - -0.5 396,336 + -1.8 396,336 + -1.4 396,423 + +0.4 396,454 - -1.9 396,454 - -0.1 396,454 - +1.2 396,516 - +0.0 396,573 + -0.2 396,574 - -0.5 396,651 + +0.6 396,709 + +0.1 396,710 - -0.8 396,728 - -0.8 396,728 - -0.4 396,752 + +1.0 396,858 + LU632_RS02020 0.13 +0.2 397,043 + -0.4 397,075 - -0.2 397,075 - -0.3 397,107 + +1.6 397,107 + +0.0 397,108 - -0.6 397,110 + -0.4 397,110 + -0.5 397,111 - +0.1 397,120 + +0.2 397,250 - LU632_RS02025 0.18 -1.0 397,278 + LU632_RS02025 0.33 -0.0 397,278 + LU632_RS02025 0.33 -0.1 397,318 + LU632_RS02025 0.54 -0.6 397,318 + LU632_RS02025 0.54 -0.3 397,319 - LU632_RS02025 0.54 -1.9 397,319 - LU632_RS02025 0.54 -0.5 397,319 - LU632_RS02025 0.54 -2.8 397,324 + LU632_RS02025 0.57 -1.4 397,324 + LU632_RS02025 0.57 -0.4 397,324 + LU632_RS02025 0.57 +0.6 397,459 + -1.9 397,469 - -1.5 397,515 + +0.7 397,515 + -0.4 397,516 - +0.6 397,516 - +0.1 397,516 - -0.2 397,592 - nnr LU632_RS02030 0.13 +0.0 397,694 + nnr LU632_RS02030 0.19 -0.2 397,979 + nnr LU632_RS02030 0.38 -0.4 397,981 + nnr LU632_RS02030 0.38 -1.3 397,982 - nnr LU632_RS02030 0.38 -0.3 398,022 + nnr LU632_RS02030 0.41 -0.9 398,022 + nnr LU632_RS02030 0.41 -0.3 398,023 - nnr LU632_RS02030 0.41 +0.2 398,040 + nnr LU632_RS02030 0.42 -0.5 398,177 + nnr LU632_RS02030 0.51 +0.1 398,179 + nnr LU632_RS02030 0.51 -1.3 398,180 - nnr LU632_RS02030 0.51 +0.2 398,330 + nnr LU632_RS02030 0.61 -1.0
Or see this region's nucleotide sequence