Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01100 and mtnC are separated by 475 nucleotides mtnC and LU632_RS01110 overlap by 29 nucleotides LU632_RS01110 and mtnA are separated by 256 nucleotides
LU632_RS01100: LU632_RS01100 - tRNA-Asp, at 235,971 to 236,047
_RS01100
LU632_RS01105: mtnC - acireductone synthase, at 236,523 to 236,964
mtnC
LU632_RS01110: LU632_RS01110 - acireductone dioxygenase, at 236,936 to 237,407
_RS01110
LU632_RS01115: mtnA - S-methyl-5-thioribose-1-phosphate isomerase, at 237,664 to 238,695
mtnA
Position (kb) 236
237
238 Strain fitness (log2 ratio) -2
-1
0
1 at 235.938 kb on - strand at 236.109 kb on + strand at 236.110 kb on - strand at 236.110 kb on - strand at 236.158 kb on + strand at 236.291 kb on - strand at 236.359 kb on + strand at 236.360 kb on - strand at 236.378 kb on + strand at 236.379 kb on - strand at 236.379 kb on - strand at 236.425 kb on + strand at 236.454 kb on + strand at 236.455 kb on - strand at 236.457 kb on - strand at 236.457 kb on - strand at 236.551 kb on + strand at 236.590 kb on + strand, within mtnC at 236.590 kb on + strand, within mtnC at 236.619 kb on + strand, within mtnC at 236.620 kb on - strand, within mtnC at 236.631 kb on + strand, within mtnC at 236.631 kb on + strand, within mtnC at 236.632 kb on - strand, within mtnC at 236.632 kb on - strand, within mtnC at 236.675 kb on + strand, within mtnC at 236.680 kb on - strand, within mtnC at 236.699 kb on + strand, within mtnC at 236.699 kb on + strand, within mtnC at 236.700 kb on - strand, within mtnC at 236.700 kb on - strand, within mtnC at 236.700 kb on - strand, within mtnC at 236.802 kb on + strand, within mtnC at 236.803 kb on - strand, within mtnC at 236.804 kb on + strand, within mtnC at 236.804 kb on + strand, within mtnC at 236.804 kb on + strand, within mtnC at 236.805 kb on - strand, within mtnC at 236.805 kb on - strand, within mtnC at 236.805 kb on - strand, within mtnC at 236.805 kb on - strand, within mtnC at 236.844 kb on + strand, within mtnC at 236.845 kb on - strand, within mtnC at 236.849 kb on + strand, within mtnC at 236.849 kb on + strand, within mtnC at 236.850 kb on - strand, within mtnC at 237.298 kb on + strand, within LU632_RS01110 at 237.298 kb on + strand, within LU632_RS01110 at 237.298 kb on + strand, within LU632_RS01110 at 237.298 kb on + strand, within LU632_RS01110 at 237.298 kb on + strand, within LU632_RS01110 at 237.299 kb on - strand, within LU632_RS01110 at 237.302 kb on + strand, within LU632_RS01110 at 237.302 kb on + strand, within LU632_RS01110 at 237.303 kb on - strand, within LU632_RS01110 at 237.309 kb on + strand, within LU632_RS01110 at 237.309 kb on + strand, within LU632_RS01110 at 237.467 kb on - strand at 237.526 kb on + strand at 237.526 kb on + strand at 237.526 kb on + strand at 237.526 kb on + strand at 237.526 kb on + strand at 237.527 kb on - strand at 237.527 kb on - strand at 237.527 kb on - strand at 237.527 kb on - strand at 237.613 kb on - strand at 237.874 kb on - strand, within mtnA at 237.906 kb on + strand, within mtnA at 237.907 kb on - strand, within mtnA at 237.907 kb on - strand, within mtnA at 237.926 kb on + strand, within mtnA at 237.968 kb on + strand, within mtnA at 237.969 kb on - strand, within mtnA at 237.969 kb on - strand, within mtnA at 238.096 kb on - strand, within mtnA at 238.260 kb on + strand, within mtnA at 238.261 kb on - strand, within mtnA at 238.261 kb on - strand, within mtnA at 238.265 kb on - strand, within mtnA at 238.265 kb on - strand, within mtnA at 238.309 kb on - strand, within mtnA at 238.327 kb on - strand, within mtnA at 238.327 kb on - strand, within mtnA at 238.327 kb on - strand, within mtnA at 238.346 kb on - strand, within mtnA at 238.346 kb on - strand, within mtnA at 238.346 kb on - strand, within mtnA
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 235,938 - +0.2 236,109 + +1.0 236,110 - -0.3 236,110 - -0.3 236,158 + -0.2 236,291 - -0.1 236,359 + -0.2 236,360 - -0.3 236,378 + +0.5 236,379 - -0.3 236,379 - +1.2 236,425 + -0.4 236,454 + +0.3 236,455 - -0.6 236,457 - -0.3 236,457 - +0.5 236,551 + +0.4 236,590 + mtnC LU632_RS01105 0.15 -0.2 236,590 + mtnC LU632_RS01105 0.15 +0.2 236,619 + mtnC LU632_RS01105 0.22 +0.2 236,620 - mtnC LU632_RS01105 0.22 -1.0 236,631 + mtnC LU632_RS01105 0.24 +0.2 236,631 + mtnC LU632_RS01105 0.24 +0.3 236,632 - mtnC LU632_RS01105 0.25 +1.4 236,632 - mtnC LU632_RS01105 0.25 -0.3 236,675 + mtnC LU632_RS01105 0.34 -1.8 236,680 - mtnC LU632_RS01105 0.36 -0.9 236,699 + mtnC LU632_RS01105 0.40 -1.3 236,699 + mtnC LU632_RS01105 0.40 +0.0 236,700 - mtnC LU632_RS01105 0.40 -0.0 236,700 - mtnC LU632_RS01105 0.40 -0.4 236,700 - mtnC LU632_RS01105 0.40 -1.1 236,802 + mtnC LU632_RS01105 0.63 -0.4 236,803 - mtnC LU632_RS01105 0.63 +0.7 236,804 + mtnC LU632_RS01105 0.64 -0.1 236,804 + mtnC LU632_RS01105 0.64 -0.7 236,804 + mtnC LU632_RS01105 0.64 -0.1 236,805 - mtnC LU632_RS01105 0.64 -1.1 236,805 - mtnC LU632_RS01105 0.64 -0.4 236,805 - mtnC LU632_RS01105 0.64 -0.3 236,805 - mtnC LU632_RS01105 0.64 -0.2 236,844 + mtnC LU632_RS01105 0.73 -0.1 236,845 - mtnC LU632_RS01105 0.73 -0.2 236,849 + mtnC LU632_RS01105 0.74 -0.2 236,849 + mtnC LU632_RS01105 0.74 -0.6 236,850 - mtnC LU632_RS01105 0.74 -1.0 237,298 + LU632_RS01110 0.77 -0.7 237,298 + LU632_RS01110 0.77 +0.7 237,298 + LU632_RS01110 0.77 -0.4 237,298 + LU632_RS01110 0.77 -0.8 237,298 + LU632_RS01110 0.77 +1.4 237,299 - LU632_RS01110 0.77 +0.1 237,302 + LU632_RS01110 0.78 -0.4 237,302 + LU632_RS01110 0.78 -1.2 237,303 - LU632_RS01110 0.78 +0.2 237,309 + LU632_RS01110 0.79 +0.2 237,309 + LU632_RS01110 0.79 -0.3 237,467 - +0.2 237,526 + -0.5 237,526 + -0.0 237,526 + +0.3 237,526 + +0.1 237,526 + +1.7 237,527 - +0.8 237,527 - -0.3 237,527 - +0.3 237,527 - -0.4 237,613 - -0.7 237,874 - mtnA LU632_RS01115 0.20 -0.4 237,906 + mtnA LU632_RS01115 0.23 +1.2 237,907 - mtnA LU632_RS01115 0.24 -0.0 237,907 - mtnA LU632_RS01115 0.24 -0.2 237,926 + mtnA LU632_RS01115 0.25 +0.2 237,968 + mtnA LU632_RS01115 0.29 -0.4 237,969 - mtnA LU632_RS01115 0.30 +0.5 237,969 - mtnA LU632_RS01115 0.30 +1.2 238,096 - mtnA LU632_RS01115 0.42 -0.2 238,260 + mtnA LU632_RS01115 0.58 -0.9 238,261 - mtnA LU632_RS01115 0.58 -0.9 238,261 - mtnA LU632_RS01115 0.58 -1.7 238,265 - mtnA LU632_RS01115 0.58 +1.2 238,265 - mtnA LU632_RS01115 0.58 -0.0 238,309 - mtnA LU632_RS01115 0.62 -0.9 238,327 - mtnA LU632_RS01115 0.64 -0.3 238,327 - mtnA LU632_RS01115 0.64 -0.2 238,327 - mtnA LU632_RS01115 0.64 -0.1 238,346 - mtnA LU632_RS01115 0.66 +1.2 238,346 - mtnA LU632_RS01115 0.66 -0.6 238,346 - mtnA LU632_RS01115 0.66 -0.2
Or see this region's nucleotide sequence