Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tssH and LU632_RS00690 are separated by 74 nucleotides LU632_RS00690 and LU632_RS00695 are separated by 159 nucleotides
LU632_RS00685: tssH - type VI secretion system ATPase TssH, at 142,576 to 145,266
tssH
LU632_RS00690: LU632_RS00690 - type 1 fimbrial protein, at 145,341 to 145,892
_RS00690
LU632_RS00695: LU632_RS00695 - fimbria/pilus periplasmic chaperone, at 146,052 to 146,798
_RS00695
Position (kb) 145
146 Strain fitness (log2 ratio) -1
0
1
2 at 144.372 kb on + strand, within tssH at 144.390 kb on + strand, within tssH at 144.444 kb on + strand, within tssH at 144.488 kb on + strand, within tssH at 144.489 kb on - strand, within tssH at 144.540 kb on + strand, within tssH at 144.540 kb on + strand, within tssH at 144.598 kb on + strand, within tssH at 144.663 kb on - strand, within tssH at 144.665 kb on + strand, within tssH at 144.665 kb on + strand, within tssH at 144.666 kb on - strand, within tssH at 144.666 kb on - strand, within tssH at 144.875 kb on + strand, within tssH at 144.930 kb on - strand, within tssH at 144.937 kb on + strand, within tssH at 145.060 kb on - strand at 145.149 kb on + strand at 145.149 kb on + strand at 145.222 kb on - strand at 145.233 kb on + strand at 145.314 kb on + strand at 145.357 kb on + strand at 145.363 kb on + strand at 145.363 kb on + strand at 145.478 kb on + strand, within LU632_RS00690 at 145.643 kb on + strand, within LU632_RS00690 at 145.674 kb on + strand, within LU632_RS00690 at 145.674 kb on + strand, within LU632_RS00690 at 145.700 kb on + strand, within LU632_RS00690 at 145.799 kb on + strand, within LU632_RS00690 at 145.799 kb on + strand, within LU632_RS00690 at 145.800 kb on - strand, within LU632_RS00690 at 145.800 kb on - strand, within LU632_RS00690 at 145.822 kb on - strand, within LU632_RS00690 at 145.822 kb on - strand, within LU632_RS00690 at 145.874 kb on + strand at 145.874 kb on + strand at 145.875 kb on - strand at 145.875 kb on - strand at 145.875 kb on - strand at 145.876 kb on - strand at 145.903 kb on - strand at 145.913 kb on + strand at 145.963 kb on + strand at 145.964 kb on - strand at 145.967 kb on + strand at 145.968 kb on - strand at 145.968 kb on - strand at 145.968 kb on - strand at 145.968 kb on - strand at 145.968 kb on - strand at 146.052 kb on - strand at 146.089 kb on + strand at 146.089 kb on + strand at 146.253 kb on - strand, within LU632_RS00695 at 146.833 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 144,372 + tssH LU632_RS00685 0.67 -0.1 144,390 + tssH LU632_RS00685 0.67 +0.2 144,444 + tssH LU632_RS00685 0.69 +2.0 144,488 + tssH LU632_RS00685 0.71 +0.3 144,489 - tssH LU632_RS00685 0.71 -0.5 144,540 + tssH LU632_RS00685 0.73 -0.2 144,540 + tssH LU632_RS00685 0.73 -1.5 144,598 + tssH LU632_RS00685 0.75 -0.1 144,663 - tssH LU632_RS00685 0.78 +0.1 144,665 + tssH LU632_RS00685 0.78 -0.2 144,665 + tssH LU632_RS00685 0.78 -0.5 144,666 - tssH LU632_RS00685 0.78 +1.0 144,666 - tssH LU632_RS00685 0.78 -0.1 144,875 + tssH LU632_RS00685 0.85 +0.4 144,930 - tssH LU632_RS00685 0.87 -0.6 144,937 + tssH LU632_RS00685 0.88 -0.8 145,060 - -0.1 145,149 + +0.1 145,149 + +0.2 145,222 - +0.4 145,233 + -0.6 145,314 + -1.1 145,357 + -0.3 145,363 + -0.0 145,363 + -1.0 145,478 + LU632_RS00690 0.25 -0.5 145,643 + LU632_RS00690 0.55 -1.6 145,674 + LU632_RS00690 0.60 +2.3 145,674 + LU632_RS00690 0.60 -1.4 145,700 + LU632_RS00690 0.65 -0.9 145,799 + LU632_RS00690 0.83 +0.5 145,799 + LU632_RS00690 0.83 +0.2 145,800 - LU632_RS00690 0.83 -0.3 145,800 - LU632_RS00690 0.83 -0.1 145,822 - LU632_RS00690 0.87 +0.3 145,822 - LU632_RS00690 0.87 -0.1 145,874 + -0.1 145,874 + -0.7 145,875 - -0.4 145,875 - +0.5 145,875 - -0.1 145,876 - +0.2 145,903 - -0.0 145,913 + -0.1 145,963 + +0.2 145,964 - -0.2 145,967 + -0.8 145,968 - -0.6 145,968 - -0.0 145,968 - -1.5 145,968 - +0.7 145,968 - -0.3 146,052 - -0.1 146,089 + -0.1 146,089 + -0.1 146,253 - LU632_RS00695 0.27 -0.3 146,833 - +0.7
Or see this region's nucleotide sequence