Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00260 and LU632_RS00265 are separated by 615 nucleotides LU632_RS00265 and dppB are separated by 212 nucleotides
LU632_RS00260: LU632_RS00260 - SMR family transporter, at 51,750 to 52,089
_RS00260
LU632_RS00265: LU632_RS00265 - ABC transporter substrate-binding protein, at 52,705 to 54,315
_RS00265
LU632_RS00270: dppB - dipeptide ABC transporter permease DppB, at 54,528 to 55,547
dppB
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -2
-1
0
1
2 at 51.762 kb on + strand at 51.762 kb on + strand at 51.762 kb on + strand at 51.762 kb on + strand at 51.815 kb on - strand, within LU632_RS00260 at 51.864 kb on + strand, within LU632_RS00260 at 51.869 kb on + strand, within LU632_RS00260 at 51.869 kb on + strand, within LU632_RS00260 at 51.870 kb on - strand, within LU632_RS00260 at 51.870 kb on - strand, within LU632_RS00260 at 51.871 kb on + strand, within LU632_RS00260 at 51.871 kb on + strand, within LU632_RS00260 at 51.872 kb on - strand, within LU632_RS00260 at 51.872 kb on - strand, within LU632_RS00260 at 51.929 kb on + strand, within LU632_RS00260 at 51.934 kb on + strand, within LU632_RS00260 at 51.935 kb on - strand, within LU632_RS00260 at 51.935 kb on - strand, within LU632_RS00260 at 51.935 kb on - strand, within LU632_RS00260 at 52.056 kb on + strand at 52.063 kb on - strand at 52.162 kb on - strand at 52.162 kb on - strand at 52.495 kb on + strand at 52.603 kb on + strand at 52.646 kb on + strand at 52.710 kb on + strand at 52.736 kb on + strand at 52.788 kb on + strand at 52.789 kb on - strand at 52.801 kb on + strand at 52.861 kb on + strand at 52.862 kb on - strand at 52.886 kb on - strand, within LU632_RS00265 at 52.975 kb on + strand, within LU632_RS00265 at 53.060 kb on + strand, within LU632_RS00265 at 53.061 kb on - strand, within LU632_RS00265 at 53.061 kb on - strand, within LU632_RS00265 at 53.098 kb on + strand, within LU632_RS00265 at 53.099 kb on - strand, within LU632_RS00265 at 53.099 kb on - strand, within LU632_RS00265 at 53.128 kb on + strand, within LU632_RS00265 at 53.129 kb on - strand, within LU632_RS00265 at 53.129 kb on - strand, within LU632_RS00265 at 53.188 kb on - strand, within LU632_RS00265 at 53.188 kb on - strand, within LU632_RS00265 at 53.256 kb on + strand, within LU632_RS00265 at 53.256 kb on + strand, within LU632_RS00265 at 53.258 kb on + strand, within LU632_RS00265 at 53.259 kb on - strand, within LU632_RS00265 at 53.380 kb on + strand, within LU632_RS00265 at 53.380 kb on + strand, within LU632_RS00265 at 53.381 kb on - strand, within LU632_RS00265 at 53.469 kb on + strand, within LU632_RS00265 at 53.469 kb on + strand, within LU632_RS00265 at 53.541 kb on + strand, within LU632_RS00265 at 53.542 kb on - strand, within LU632_RS00265 at 53.599 kb on - strand, within LU632_RS00265 at 53.684 kb on - strand, within LU632_RS00265 at 53.724 kb on + strand, within LU632_RS00265 at 53.738 kb on - strand, within LU632_RS00265 at 53.740 kb on - strand, within LU632_RS00265 at 53.764 kb on + strand, within LU632_RS00265 at 53.821 kb on - strand, within LU632_RS00265 at 53.858 kb on - strand, within LU632_RS00265 at 53.858 kb on - strand, within LU632_RS00265 at 53.858 kb on - strand, within LU632_RS00265 at 53.877 kb on + strand, within LU632_RS00265 at 53.938 kb on + strand, within LU632_RS00265 at 54.079 kb on + strand, within LU632_RS00265 at 54.079 kb on + strand, within LU632_RS00265 at 54.094 kb on + strand, within LU632_RS00265 at 54.095 kb on - strand, within LU632_RS00265 at 54.160 kb on + strand at 54.161 kb on - strand at 54.161 kb on - strand at 54.161 kb on - strand at 54.163 kb on + strand at 54.163 kb on + strand at 54.164 kb on - strand at 54.164 kb on - strand at 54.207 kb on - strand at 54.279 kb on + strand at 54.279 kb on + strand at 54.306 kb on + strand at 54.314 kb on - strand at 54.479 kb on + strand at 54.480 kb on - strand at 54.527 kb on + strand at 54.527 kb on + strand at 54.541 kb on + strand at 54.542 kb on - strand at 54.576 kb on - strand at 54.582 kb on - strand at 54.589 kb on + strand at 54.589 kb on + strand at 54.611 kb on + strand at 54.723 kb on + strand, within dppB at 54.724 kb on - strand, within dppB at 54.724 kb on - strand, within dppB at 54.724 kb on - strand, within dppB at 54.725 kb on + strand, within dppB at 54.725 kb on + strand, within dppB at 54.725 kb on + strand, within dppB at 54.725 kb on + strand, within dppB at 54.726 kb on - strand, within dppB at 54.726 kb on - strand, within dppB at 54.764 kb on + strand, within dppB at 54.765 kb on - strand, within dppB at 54.816 kb on - strand, within dppB at 54.932 kb on + strand, within dppB at 54.987 kb on - strand, within dppB at 54.987 kb on - strand, within dppB at 55.046 kb on - strand, within dppB at 55.092 kb on - strand, within dppB at 55.233 kb on + strand, within dppB at 55.234 kb on - strand, within dppB at 55.234 kb on - strand, within dppB at 55.234 kb on - strand, within dppB at 55.235 kb on + strand, within dppB at 55.236 kb on - strand, within dppB at 55.236 kb on - strand, within dppB at 55.298 kb on + strand, within dppB at 55.298 kb on + strand, within dppB
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 51,762 + -1.3 51,762 + +0.1 51,762 + -1.7 51,762 + -0.5 51,815 - LU632_RS00260 0.19 +0.1 51,864 + LU632_RS00260 0.34 +0.1 51,869 + LU632_RS00260 0.35 -0.2 51,869 + LU632_RS00260 0.35 +0.3 51,870 - LU632_RS00260 0.35 +0.9 51,870 - LU632_RS00260 0.35 +0.0 51,871 + LU632_RS00260 0.36 +0.6 51,871 + LU632_RS00260 0.36 -0.4 51,872 - LU632_RS00260 0.36 +0.2 51,872 - LU632_RS00260 0.36 -0.3 51,929 + LU632_RS00260 0.53 -0.1 51,934 + LU632_RS00260 0.54 -1.2 51,935 - LU632_RS00260 0.54 +0.1 51,935 - LU632_RS00260 0.54 -0.3 51,935 - LU632_RS00260 0.54 -0.1 52,056 + +0.3 52,063 - +0.1 52,162 - -0.7 52,162 - -0.4 52,495 + +0.0 52,603 + -0.3 52,646 + -0.6 52,710 + -2.4 52,736 + -0.7 52,788 + -0.9 52,789 - +0.1 52,801 + -0.5 52,861 + +0.5 52,862 - -0.9 52,886 - LU632_RS00265 0.11 -0.7 52,975 + LU632_RS00265 0.17 -0.3 53,060 + LU632_RS00265 0.22 -0.3 53,061 - LU632_RS00265 0.22 +0.6 53,061 - LU632_RS00265 0.22 -0.3 53,098 + LU632_RS00265 0.24 -0.2 53,099 - LU632_RS00265 0.24 -0.1 53,099 - LU632_RS00265 0.24 -0.6 53,128 + LU632_RS00265 0.26 -0.2 53,129 - LU632_RS00265 0.26 +0.5 53,129 - LU632_RS00265 0.26 -0.7 53,188 - LU632_RS00265 0.30 +0.1 53,188 - LU632_RS00265 0.30 +0.7 53,256 + LU632_RS00265 0.34 -0.2 53,256 + LU632_RS00265 0.34 +0.9 53,258 + LU632_RS00265 0.34 -0.2 53,259 - LU632_RS00265 0.34 +0.9 53,380 + LU632_RS00265 0.42 -0.4 53,380 + LU632_RS00265 0.42 -0.5 53,381 - LU632_RS00265 0.42 -0.3 53,469 + LU632_RS00265 0.47 +0.1 53,469 + LU632_RS00265 0.47 -0.1 53,541 + LU632_RS00265 0.52 -0.4 53,542 - LU632_RS00265 0.52 +2.0 53,599 - LU632_RS00265 0.55 -1.9 53,684 - LU632_RS00265 0.61 -0.0 53,724 + LU632_RS00265 0.63 -0.0 53,738 - LU632_RS00265 0.64 -1.1 53,740 - LU632_RS00265 0.64 -0.2 53,764 + LU632_RS00265 0.66 -0.4 53,821 - LU632_RS00265 0.69 +0.3 53,858 - LU632_RS00265 0.72 +0.0 53,858 - LU632_RS00265 0.72 +1.3 53,858 - LU632_RS00265 0.72 -0.1 53,877 + LU632_RS00265 0.73 -0.6 53,938 + LU632_RS00265 0.77 +1.6 54,079 + LU632_RS00265 0.85 -0.3 54,079 + LU632_RS00265 0.85 -0.7 54,094 + LU632_RS00265 0.86 -0.9 54,095 - LU632_RS00265 0.86 +1.0 54,160 + -1.2 54,161 - +1.3 54,161 - -0.7 54,161 - +0.4 54,163 + -1.1 54,163 + -0.7 54,164 - +0.7 54,164 - +0.1 54,207 - -0.1 54,279 + -0.4 54,279 + +0.8 54,306 + +0.1 54,314 - -0.6 54,479 + -0.6 54,480 - -1.1 54,527 + +1.9 54,527 + -0.4 54,541 + -0.6 54,542 - +0.6 54,576 - -0.2 54,582 - -0.1 54,589 + +1.3 54,589 + -1.0 54,611 + -0.7 54,723 + dppB LU632_RS00270 0.19 -0.0 54,724 - dppB LU632_RS00270 0.19 +1.3 54,724 - dppB LU632_RS00270 0.19 -0.7 54,724 - dppB LU632_RS00270 0.19 +0.0 54,725 + dppB LU632_RS00270 0.19 -0.3 54,725 + dppB LU632_RS00270 0.19 -0.4 54,725 + dppB LU632_RS00270 0.19 +0.3 54,725 + dppB LU632_RS00270 0.19 -0.3 54,726 - dppB LU632_RS00270 0.19 -1.5 54,726 - dppB LU632_RS00270 0.19 +1.0 54,764 + dppB LU632_RS00270 0.23 -0.1 54,765 - dppB LU632_RS00270 0.23 +0.0 54,816 - dppB LU632_RS00270 0.28 +0.3 54,932 + dppB LU632_RS00270 0.40 +1.3 54,987 - dppB LU632_RS00270 0.45 -0.4 54,987 - dppB LU632_RS00270 0.45 +1.3 55,046 - dppB LU632_RS00270 0.51 +1.7 55,092 - dppB LU632_RS00270 0.55 -0.6 55,233 + dppB LU632_RS00270 0.69 -0.3 55,234 - dppB LU632_RS00270 0.69 +0.3 55,234 - dppB LU632_RS00270 0.69 -1.1 55,234 - dppB LU632_RS00270 0.69 -0.0 55,235 + dppB LU632_RS00270 0.69 -0.4 55,236 - dppB LU632_RS00270 0.69 -0.7 55,236 - dppB LU632_RS00270 0.69 -0.2 55,298 + dppB LU632_RS00270 0.75 +0.1 55,298 + dppB LU632_RS00270 0.75 +0.5
Or see this region's nucleotide sequence