Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS16895 and ABIE41_RS16900 are separated by 219 nucleotides ABIE41_RS16900 and ABIE41_RS16905 are separated by 0 nucleotides ABIE41_RS16905 and ABIE41_RS16910 are separated by 335 nucleotides
ABIE41_RS16895: ABIE41_RS16895 - type I glutamate--ammonia ligase, at 3,480,606 to 3,482,015
_RS16895
ABIE41_RS16900: ABIE41_RS16900 - glycosyltransferase family 1 protein, at 3,482,235 to 3,483,332
_RS16900
ABIE41_RS16905: ABIE41_RS16905 - hypothetical protein, at 3,483,333 to 3,483,479
_RS16905
ABIE41_RS16910: ABIE41_RS16910 - DNA topoisomerase IV subunit B, at 3,483,815 to 3,485,872
_RS16910
Position (kb)
3482
3483
3484 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3482.010 kb on + strand at 3482.010 kb on + strand at 3482.010 kb on + strand at 3482.182 kb on - strand at 3482.814 kb on + strand, within ABIE41_RS16900 at 3482.814 kb on + strand, within ABIE41_RS16900 at 3482.814 kb on + strand, within ABIE41_RS16900 at 3482.814 kb on + strand, within ABIE41_RS16900 at 3482.814 kb on + strand, within ABIE41_RS16900 at 3482.815 kb on - strand, within ABIE41_RS16900 at 3482.815 kb on - strand, within ABIE41_RS16900 at 3482.815 kb on - strand, within ABIE41_RS16900 at 3482.815 kb on - strand, within ABIE41_RS16900 at 3482.815 kb on - strand, within ABIE41_RS16900 at 3482.821 kb on + strand, within ABIE41_RS16900 at 3482.821 kb on + strand, within ABIE41_RS16900 at 3482.822 kb on - strand, within ABIE41_RS16900 at 3483.051 kb on + strand, within ABIE41_RS16900 at 3483.052 kb on - strand, within ABIE41_RS16900 at 3483.156 kb on + strand, within ABIE41_RS16900 at 3483.157 kb on - strand, within ABIE41_RS16900 at 3483.157 kb on - strand, within ABIE41_RS16900 at 3483.687 kb on + strand at 3483.687 kb on + strand at 3483.687 kb on + strand at 3483.687 kb on + strand at 3483.687 kb on + strand at 3483.687 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM remove 3,482,010 + -0.6 3,482,010 + -1.0 3,482,010 + -0.8 3,482,182 - +1.5 3,482,814 + ABIE41_RS16900 0.53 -1.5 3,482,814 + ABIE41_RS16900 0.53 -0.2 3,482,814 + ABIE41_RS16900 0.53 +0.0 3,482,814 + ABIE41_RS16900 0.53 -0.0 3,482,814 + ABIE41_RS16900 0.53 +1.2 3,482,815 - ABIE41_RS16900 0.53 -0.2 3,482,815 - ABIE41_RS16900 0.53 -0.4 3,482,815 - ABIE41_RS16900 0.53 -0.1 3,482,815 - ABIE41_RS16900 0.53 +0.3 3,482,815 - ABIE41_RS16900 0.53 +3.6 3,482,821 + ABIE41_RS16900 0.53 -0.1 3,482,821 + ABIE41_RS16900 0.53 +0.4 3,482,822 - ABIE41_RS16900 0.53 -1.5 3,483,051 + ABIE41_RS16900 0.74 +0.4 3,483,052 - ABIE41_RS16900 0.74 +0.5 3,483,156 + ABIE41_RS16900 0.84 -2.6 3,483,157 - ABIE41_RS16900 0.84 -0.1 3,483,157 - ABIE41_RS16900 0.84 -0.5 3,483,687 + -0.4 3,483,687 + +0.2 3,483,687 + +1.2 3,483,687 + +0.6 3,483,687 + -0.1 3,483,687 + -0.2
Or see this region's nucleotide sequence