Strain Fitness in Bosea sp. OAE506 around ABIE41_RS02255

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS02245 and ABIE41_RS02250 are separated by 42 nucleotidesABIE41_RS02250 and ABIE41_RS02255 are separated by 210 nucleotidesABIE41_RS02255 and ABIE41_RS02260 overlap by 4 nucleotidesABIE41_RS02260 and ABIE41_RS02265 are separated by 2 nucleotides ABIE41_RS02245: ABIE41_RS02245 - amidase, at 447,738 to 449,147 _RS02245 ABIE41_RS02250: ABIE41_RS02250 - GntR family transcriptional regulator, at 449,190 to 449,891 _RS02250 ABIE41_RS02255: ABIE41_RS02255 - AbrB family transcriptional regulator, at 450,102 to 451,256 _RS02255 ABIE41_RS02260: ABIE41_RS02260 - DMT family transporter, at 451,253 to 452,167 _RS02260 ABIE41_RS02265: ABIE41_RS02265 - asparaginase, at 452,170 to 453,171 _RS02265 Position (kb) 450 451 452Strain fitness (log2 ratio) -2 -1 0 1 2at 449.231 kb on + strandat 449.232 kb on - strandat 449.275 kb on + strand, within ABIE41_RS02250at 449.396 kb on + strand, within ABIE41_RS02250at 449.396 kb on + strand, within ABIE41_RS02250at 449.397 kb on - strand, within ABIE41_RS02250at 449.397 kb on - strand, within ABIE41_RS02250at 449.397 kb on - strand, within ABIE41_RS02250at 449.397 kb on - strand, within ABIE41_RS02250at 449.397 kb on - strand, within ABIE41_RS02250at 449.570 kb on - strand, within ABIE41_RS02250at 449.646 kb on - strand, within ABIE41_RS02250at 449.659 kb on + strand, within ABIE41_RS02250at 449.659 kb on + strand, within ABIE41_RS02250at 449.659 kb on + strand, within ABIE41_RS02250at 449.659 kb on + strand, within ABIE41_RS02250at 449.659 kb on + strand, within ABIE41_RS02250at 449.659 kb on + strand, within ABIE41_RS02250at 449.659 kb on + strand, within ABIE41_RS02250at 449.659 kb on + strand, within ABIE41_RS02250at 449.659 kb on + strand, within ABIE41_RS02250at 449.660 kb on - strand, within ABIE41_RS02250at 449.660 kb on - strand, within ABIE41_RS02250at 449.660 kb on - strand, within ABIE41_RS02250at 449.660 kb on - strand, within ABIE41_RS02250at 449.660 kb on - strand, within ABIE41_RS02250at 449.660 kb on - strand, within ABIE41_RS02250at 449.660 kb on - strand, within ABIE41_RS02250at 449.660 kb on - strand, within ABIE41_RS02250at 449.660 kb on - strand, within ABIE41_RS02250at 449.660 kb on - strand, within ABIE41_RS02250at 449.660 kb on - strand, within ABIE41_RS02250at 449.660 kb on - strand, within ABIE41_RS02250at 449.660 kb on - strand, within ABIE41_RS02250at 449.660 kb on - strand, within ABIE41_RS02250at 449.660 kb on - strand, within ABIE41_RS02250at 449.660 kb on - strand, within ABIE41_RS02250at 449.830 kb on + strandat 449.830 kb on + strandat 449.830 kb on + strandat 449.830 kb on + strandat 449.830 kb on + strandat 449.831 kb on - strandat 449.831 kb on - strandat 449.831 kb on - strandat 450.017 kb on + strandat 450.017 kb on + strandat 450.017 kb on + strandat 450.017 kb on + strandat 450.084 kb on + strandat 450.172 kb on + strandat 450.173 kb on - strandat 450.173 kb on - strandat 450.295 kb on + strand, within ABIE41_RS02255at 450.296 kb on - strand, within ABIE41_RS02255at 450.420 kb on - strand, within ABIE41_RS02255at 450.562 kb on + strand, within ABIE41_RS02255at 450.562 kb on + strand, within ABIE41_RS02255at 450.562 kb on + strand, within ABIE41_RS02255at 450.563 kb on - strand, within ABIE41_RS02255at 450.563 kb on - strand, within ABIE41_RS02255at 450.563 kb on - strand, within ABIE41_RS02255at 450.748 kb on + strand, within ABIE41_RS02255at 450.838 kb on + strand, within ABIE41_RS02255at 450.838 kb on + strand, within ABIE41_RS02255at 450.839 kb on - strand, within ABIE41_RS02255at 450.839 kb on - strand, within ABIE41_RS02255at 450.856 kb on + strand, within ABIE41_RS02255at 450.857 kb on - strand, within ABIE41_RS02255at 450.877 kb on + strand, within ABIE41_RS02255at 450.877 kb on + strand, within ABIE41_RS02255at 450.877 kb on + strand, within ABIE41_RS02255at 450.878 kb on - strand, within ABIE41_RS02255at 450.878 kb on - strand, within ABIE41_RS02255at 450.878 kb on - strand, within ABIE41_RS02255at 451.245 kb on + strandat 451.305 kb on + strandat 451.305 kb on + strandat 451.306 kb on - strandat 451.306 kb on - strandat 451.306 kb on - strandat 451.416 kb on + strand, within ABIE41_RS02260at 451.416 kb on + strand, within ABIE41_RS02260at 451.417 kb on - strand, within ABIE41_RS02260at 451.473 kb on + strand, within ABIE41_RS02260at 451.473 kb on + strand, within ABIE41_RS02260at 451.474 kb on - strand, within ABIE41_RS02260at 451.474 kb on - strand, within ABIE41_RS02260at 451.474 kb on - strand, within ABIE41_RS02260at 451.474 kb on - strand, within ABIE41_RS02260at 451.873 kb on - strand, within ABIE41_RS02260at 451.873 kb on - strand, within ABIE41_RS02260at 452.174 kb on + strandat 452.174 kb on + strandat 452.175 kb on - strandat 452.175 kb on - strandat 452.175 kb on - strandat 452.175 kb on - strandat 452.175 kb on - strandat 452.175 kb on - strandat 452.175 kb on - strandat 452.175 kb on - strandat 452.175 kb on - strandat 452.175 kb on - strandat 452.175 kb on - strandat 452.175 kb on - strandat 452.175 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM
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449,231 + -2.7
449,232 - -1.0
449,275 + ABIE41_RS02250 0.12 +0.6
449,396 + ABIE41_RS02250 0.29 +0.1
449,396 + ABIE41_RS02250 0.29 -0.1
449,397 - ABIE41_RS02250 0.29 +1.0
449,397 - ABIE41_RS02250 0.29 -0.7
449,397 - ABIE41_RS02250 0.29 -0.4
449,397 - ABIE41_RS02250 0.29 +0.9
449,397 - ABIE41_RS02250 0.29 -0.5
449,570 - ABIE41_RS02250 0.54 +0.2
449,646 - ABIE41_RS02250 0.65 +0.6
449,659 + ABIE41_RS02250 0.67 +0.2
449,659 + ABIE41_RS02250 0.67 +0.2
449,659 + ABIE41_RS02250 0.67 -0.6
449,659 + ABIE41_RS02250 0.67 -0.7
449,659 + ABIE41_RS02250 0.67 +0.1
449,659 + ABIE41_RS02250 0.67 +0.0
449,659 + ABIE41_RS02250 0.67 +0.0
449,659 + ABIE41_RS02250 0.67 -0.3
449,659 + ABIE41_RS02250 0.67 -0.5
449,660 - ABIE41_RS02250 0.67 +1.1
449,660 - ABIE41_RS02250 0.67 -2.3
449,660 - ABIE41_RS02250 0.67 -0.1
449,660 - ABIE41_RS02250 0.67 +0.3
449,660 - ABIE41_RS02250 0.67 +0.2
449,660 - ABIE41_RS02250 0.67 -0.1
449,660 - ABIE41_RS02250 0.67 -0.6
449,660 - ABIE41_RS02250 0.67 +0.9
449,660 - ABIE41_RS02250 0.67 -0.2
449,660 - ABIE41_RS02250 0.67 -2.7
449,660 - ABIE41_RS02250 0.67 -0.2
449,660 - ABIE41_RS02250 0.67 +0.4
449,660 - ABIE41_RS02250 0.67 +1.8
449,660 - ABIE41_RS02250 0.67 +1.5
449,660 - ABIE41_RS02250 0.67 -1.3
449,660 - ABIE41_RS02250 0.67 +0.1
449,830 + -0.1
449,830 + -0.2
449,830 + +0.5
449,830 + +0.8
449,830 + -0.4
449,831 - -1.1
449,831 - +0.2
449,831 - +0.4
450,017 + -0.1
450,017 + -0.1
450,017 + -0.7
450,017 + +0.5
450,084 + -0.6
450,172 + -0.4
450,173 - +0.5
450,173 - +1.3
450,295 + ABIE41_RS02255 0.17 -0.5
450,296 - ABIE41_RS02255 0.17 -0.1
450,420 - ABIE41_RS02255 0.28 -1.8
450,562 + ABIE41_RS02255 0.40 +0.5
450,562 + ABIE41_RS02255 0.40 +0.7
450,562 + ABIE41_RS02255 0.40 -0.9
450,563 - ABIE41_RS02255 0.40 +0.1
450,563 - ABIE41_RS02255 0.40 -1.9
450,563 - ABIE41_RS02255 0.40 -0.7
450,748 + ABIE41_RS02255 0.56 -1.2
450,838 + ABIE41_RS02255 0.64 +0.2
450,838 + ABIE41_RS02255 0.64 -0.0
450,839 - ABIE41_RS02255 0.64 +1.0
450,839 - ABIE41_RS02255 0.64 -0.7
450,856 + ABIE41_RS02255 0.65 -0.7
450,857 - ABIE41_RS02255 0.65 -0.0
450,877 + ABIE41_RS02255 0.67 +0.3
450,877 + ABIE41_RS02255 0.67 +1.3
450,877 + ABIE41_RS02255 0.67 -1.1
450,878 - ABIE41_RS02255 0.67 +0.6
450,878 - ABIE41_RS02255 0.67 -2.0
450,878 - ABIE41_RS02255 0.67 -0.1
451,245 + +0.4
451,305 + -0.7
451,305 + +0.2
451,306 - +0.8
451,306 - -0.3
451,306 - -0.2
451,416 + ABIE41_RS02260 0.18 -0.5
451,416 + ABIE41_RS02260 0.18 -0.7
451,417 - ABIE41_RS02260 0.18 -0.0
451,473 + ABIE41_RS02260 0.24 -0.0
451,473 + ABIE41_RS02260 0.24 +1.1
451,474 - ABIE41_RS02260 0.24 +0.9
451,474 - ABIE41_RS02260 0.24 +0.8
451,474 - ABIE41_RS02260 0.24 -1.1
451,474 - ABIE41_RS02260 0.24 +0.3
451,873 - ABIE41_RS02260 0.68 +1.0
451,873 - ABIE41_RS02260 0.68 -2.5
452,174 + -0.6
452,174 + +0.2
452,175 - +0.4
452,175 - -0.6
452,175 - +1.2
452,175 - +0.1
452,175 - +1.0
452,175 - +2.6
452,175 - +0.1
452,175 - +0.3
452,175 - -0.2
452,175 - +0.0
452,175 - -0.3
452,175 - -0.4
452,175 - -0.3

Or see this region's nucleotide sequence