Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mioC and LU632_RS24825 are separated by 328 nucleotides LU632_RS24825 and viaA are separated by 199 nucleotides
LU632_RS24820: mioC - FMN-binding protein MioC, at 4,729,272 to 4,729,715
mioC
LU632_RS24825: LU632_RS24825 - IS91 family transposase, at 4,730,044 to 4,731,267
_RS24825
LU632_RS24830: viaA - ATPase RavA stimulator ViaA, at 4,731,467 to 4,732,930
viaA
Position (kb) 4730
4731
4732 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4729.209 kb on + strand at 4729.215 kb on - strand at 4729.463 kb on - strand, within mioC at 4729.467 kb on + strand, within mioC at 4729.467 kb on + strand, within mioC at 4729.472 kb on + strand, within mioC at 4729.473 kb on - strand, within mioC at 4729.473 kb on - strand, within mioC at 4729.477 kb on - strand, within mioC at 4729.560 kb on + strand, within mioC at 4729.560 kb on + strand, within mioC at 4729.561 kb on - strand, within mioC at 4729.561 kb on - strand, within mioC at 4729.608 kb on + strand, within mioC at 4729.612 kb on - strand, within mioC at 4729.612 kb on - strand, within mioC at 4729.612 kb on - strand, within mioC at 4729.666 kb on + strand, within mioC at 4729.666 kb on + strand, within mioC at 4729.680 kb on + strand at 4729.680 kb on + strand at 4729.704 kb on + strand at 4729.705 kb on - strand at 4729.738 kb on + strand at 4729.742 kb on + strand at 4729.747 kb on + strand at 4729.747 kb on + strand at 4729.759 kb on - strand at 4729.770 kb on + strand at 4729.771 kb on - strand at 4729.780 kb on + strand at 4729.810 kb on - strand at 4729.810 kb on - strand at 4731.418 kb on + strand at 4731.418 kb on + strand at 4731.419 kb on - strand at 4731.422 kb on + strand at 4731.423 kb on - strand at 4731.430 kb on + strand at 4731.430 kb on + strand at 4731.431 kb on - strand at 4731.437 kb on + strand at 4731.523 kb on + strand at 4731.541 kb on + strand at 4731.541 kb on + strand at 4731.616 kb on + strand, within viaA at 4731.664 kb on + strand, within viaA at 4731.664 kb on + strand, within viaA at 4731.669 kb on - strand, within viaA at 4731.811 kb on - strand, within viaA at 4731.811 kb on - strand, within viaA at 4731.952 kb on + strand, within viaA at 4731.953 kb on - strand, within viaA at 4732.041 kb on + strand, within viaA at 4732.042 kb on - strand, within viaA
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 4,729,209 + -0.3 4,729,215 - -0.8 4,729,463 - mioC LU632_RS24820 0.43 -0.2 4,729,467 + mioC LU632_RS24820 0.44 -0.2 4,729,467 + mioC LU632_RS24820 0.44 -0.4 4,729,472 + mioC LU632_RS24820 0.45 +1.3 4,729,473 - mioC LU632_RS24820 0.45 -1.8 4,729,473 - mioC LU632_RS24820 0.45 -0.7 4,729,477 - mioC LU632_RS24820 0.46 -0.1 4,729,560 + mioC LU632_RS24820 0.65 -0.2 4,729,560 + mioC LU632_RS24820 0.65 -0.1 4,729,561 - mioC LU632_RS24820 0.65 -0.3 4,729,561 - mioC LU632_RS24820 0.65 -0.9 4,729,608 + mioC LU632_RS24820 0.76 -0.6 4,729,612 - mioC LU632_RS24820 0.77 -0.0 4,729,612 - mioC LU632_RS24820 0.77 -0.6 4,729,612 - mioC LU632_RS24820 0.77 +0.9 4,729,666 + mioC LU632_RS24820 0.89 +1.9 4,729,666 + mioC LU632_RS24820 0.89 -0.0 4,729,680 + +0.3 4,729,680 + -0.3 4,729,704 + +0.2 4,729,705 - -0.0 4,729,738 + +0.4 4,729,742 + -1.2 4,729,747 + -0.6 4,729,747 + +1.6 4,729,759 - -0.3 4,729,770 + +0.2 4,729,771 - +0.6 4,729,780 + -0.3 4,729,810 - -0.1 4,729,810 - +1.1 4,731,418 + -0.3 4,731,418 + -0.3 4,731,419 - -0.1 4,731,422 + -0.3 4,731,423 - -0.3 4,731,430 + +0.2 4,731,430 + +1.2 4,731,431 - -0.1 4,731,437 + -0.7 4,731,523 + +1.0 4,731,541 + -0.2 4,731,541 + -0.8 4,731,616 + viaA LU632_RS24830 0.10 -1.3 4,731,664 + viaA LU632_RS24830 0.13 +0.2 4,731,664 + viaA LU632_RS24830 0.13 +0.4 4,731,669 - viaA LU632_RS24830 0.14 -0.0 4,731,811 - viaA LU632_RS24830 0.23 +0.3 4,731,811 - viaA LU632_RS24830 0.23 +0.1 4,731,952 + viaA LU632_RS24830 0.33 -0.2 4,731,953 - viaA LU632_RS24830 0.33 +0.3 4,732,041 + viaA LU632_RS24830 0.39 -0.3 4,732,042 - viaA LU632_RS24830 0.39 -0.4
Or see this region's nucleotide sequence