Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24340 and LU632_RS24345 are separated by 2 nucleotides LU632_RS24345 and LU632_RS24350 are separated by 534 nucleotides LU632_RS24350 and LU632_RS24355 are separated by 100 nucleotides LU632_RS24355 and LU632_RS24360 overlap by 1 nucleotides LU632_RS24360 and LU632_RS24365 are separated by 196 nucleotides
LU632_RS24340: LU632_RS24340 - pesticin C-terminus-like muramidase, at 4,643,765 to 4,644,367
_RS24340
LU632_RS24345: LU632_RS24345 - hypothetical protein, at 4,644,370 to 4,644,783
_RS24345
LU632_RS24350: LU632_RS24350 - IS6 family transposase, at 4,645,318 to 4,646,022
_RS24350
LU632_RS24355: LU632_RS24355 - type II toxin-antitoxin system PemK/MazF family toxin, at 4,646,123 to 4,646,488
_RS24355
LU632_RS24360: LU632_RS24360 - hypothetical protein, at 4,646,488 to 4,646,760
_RS24360
LU632_RS24365: LU632_RS24365 - IS6 family transposase, at 4,646,957 to 4,647,514
_RS24365
Position (kb) 4645
4646
4647 Strain fitness (log2 ratio) -1
0
1 at 4644.702 kb on + strand, within LU632_RS24345 at 4644.797 kb on - strand at 4644.801 kb on + strand at 4644.865 kb on + strand at 4644.925 kb on + strand at 4645.016 kb on + strand at 4645.017 kb on - strand at 4645.017 kb on - strand at 4645.089 kb on + strand at 4645.099 kb on + strand at 4645.099 kb on + strand at 4645.105 kb on + strand at 4645.234 kb on + strand at 4645.249 kb on + strand at 4645.249 kb on + strand at 4645.283 kb on - strand at 4646.158 kb on + strand at 4646.173 kb on + strand, within LU632_RS24355 at 4646.174 kb on - strand, within LU632_RS24355 at 4646.174 kb on - strand, within LU632_RS24355 at 4646.293 kb on - strand, within LU632_RS24355 at 4646.397 kb on + strand, within LU632_RS24355 at 4646.397 kb on + strand, within LU632_RS24355 at 4646.398 kb on - strand, within LU632_RS24355 at 4646.398 kb on - strand, within LU632_RS24355 at 4646.398 kb on - strand, within LU632_RS24355 at 4646.398 kb on - strand, within LU632_RS24355 at 4646.400 kb on + strand, within LU632_RS24355 at 4646.401 kb on - strand, within LU632_RS24355 at 4646.493 kb on + strand at 4646.494 kb on - strand at 4646.798 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 4,644,702 + LU632_RS24345 0.80 -0.7 4,644,797 - -0.5 4,644,801 + -0.3 4,644,865 + -0.2 4,644,925 + -0.0 4,645,016 + -0.1 4,645,017 - -0.4 4,645,017 - +0.4 4,645,089 + -0.7 4,645,099 + -0.7 4,645,099 + +0.3 4,645,105 + -0.7 4,645,234 + -0.4 4,645,249 + -0.5 4,645,249 + -0.4 4,645,283 - +1.2 4,646,158 + +0.0 4,646,173 + LU632_RS24355 0.14 +0.6 4,646,174 - LU632_RS24355 0.14 -0.3 4,646,174 - LU632_RS24355 0.14 +0.8 4,646,293 - LU632_RS24355 0.46 -0.2 4,646,397 + LU632_RS24355 0.75 -0.1 4,646,397 + LU632_RS24355 0.75 -0.4 4,646,398 - LU632_RS24355 0.75 +0.3 4,646,398 - LU632_RS24355 0.75 -0.7 4,646,398 - LU632_RS24355 0.75 +0.2 4,646,398 - LU632_RS24355 0.75 -0.3 4,646,400 + LU632_RS24355 0.76 +0.3 4,646,401 - LU632_RS24355 0.76 +0.1 4,646,493 + +0.4 4,646,494 - +0.2 4,646,798 - +1.2
Or see this region's nucleotide sequence