Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23560 and LU632_RS23565 overlap by 4 nucleotides LU632_RS23565 and fni overlap by 14 nucleotides fni and LU632_RS23575 are separated by 101 nucleotides LU632_RS23575 and LU632_RS23580 overlap by 22 nucleotides LU632_RS23580 and LU632_RS23585 are separated by 8 nucleotides
LU632_RS23560: LU632_RS23560 - hypothetical protein, at 4,494,676 to 4,496,247
_RS23560
LU632_RS23565: LU632_RS23565 - hypothetical protein, at 4,496,244 to 4,497,194
_RS23565
LU632_RS23570: fni - type 2 isopentenyl-diphosphate Delta-isomerase, at 4,497,181 to 4,498,230
fni
LU632_RS23575: LU632_RS23575 - hypothetical protein, at 4,498,332 to 4,498,457
_RS23575
LU632_RS23580: LU632_RS23580 - hypothetical protein, at 4,498,436 to 4,498,561
_RS23580
LU632_RS23585: LU632_RS23585 - transposase, at 4,498,570 to 4,499,225
_RS23585
Position (kb) 4497
4498
4499 Strain fitness (log2 ratio) -1
0
1 at 4496.243 kb on + strand at 4496.348 kb on + strand, within LU632_RS23565 at 4496.436 kb on + strand, within LU632_RS23565 at 4496.436 kb on + strand, within LU632_RS23565 at 4496.437 kb on - strand, within LU632_RS23565 at 4496.437 kb on - strand, within LU632_RS23565 at 4496.456 kb on - strand, within LU632_RS23565 at 4496.522 kb on + strand, within LU632_RS23565 at 4496.553 kb on - strand, within LU632_RS23565 at 4496.553 kb on - strand, within LU632_RS23565 at 4497.078 kb on + strand, within LU632_RS23565 at 4497.078 kb on + strand, within LU632_RS23565 at 4497.078 kb on + strand, within LU632_RS23565 at 4497.079 kb on - strand, within LU632_RS23565 at 4497.079 kb on - strand, within LU632_RS23565 at 4497.082 kb on - strand, within LU632_RS23565 at 4497.196 kb on - strand at 4497.200 kb on + strand at 4497.400 kb on - strand, within fni at 4497.532 kb on - strand, within fni at 4497.532 kb on - strand, within fni at 4497.791 kb on + strand, within fni at 4497.792 kb on - strand, within fni at 4497.792 kb on - strand, within fni at 4497.819 kb on - strand, within fni at 4498.310 kb on - strand at 4498.321 kb on + strand at 4498.328 kb on - strand at 4498.453 kb on + strand at 4498.454 kb on - strand at 4498.559 kb on + strand at 4498.560 kb on - strand at 4498.663 kb on - strand, within LU632_RS23585 at 4498.665 kb on - strand, within LU632_RS23585 at 4498.665 kb on - strand, within LU632_RS23585 at 4498.665 kb on - strand, within LU632_RS23585 at 4498.726 kb on + strand, within LU632_RS23585 at 4498.727 kb on - strand, within LU632_RS23585 at 4498.727 kb on - strand, within LU632_RS23585 at 4498.727 kb on - strand, within LU632_RS23585 at 4498.727 kb on - strand, within LU632_RS23585 at 4498.729 kb on - strand, within LU632_RS23585 at 4498.729 kb on - strand, within LU632_RS23585 at 4498.831 kb on - strand, within LU632_RS23585 at 4498.932 kb on + strand, within LU632_RS23585 at 4498.933 kb on - strand, within LU632_RS23585 at 4498.933 kb on - strand, within LU632_RS23585 at 4498.933 kb on - strand, within LU632_RS23585 at 4498.968 kb on + strand, within LU632_RS23585 at 4499.020 kb on - strand, within LU632_RS23585 at 4499.082 kb on - strand, within LU632_RS23585 at 4499.197 kb on + strand at 4499.198 kb on - strand at 4499.211 kb on + strand at 4499.211 kb on + strand at 4499.211 kb on + strand at 4499.211 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 4,496,243 + -0.0 4,496,348 + LU632_RS23565 0.11 -0.1 4,496,436 + LU632_RS23565 0.20 +0.3 4,496,436 + LU632_RS23565 0.20 +1.1 4,496,437 - LU632_RS23565 0.20 -1.3 4,496,437 - LU632_RS23565 0.20 -1.4 4,496,456 - LU632_RS23565 0.22 +0.8 4,496,522 + LU632_RS23565 0.29 +1.1 4,496,553 - LU632_RS23565 0.32 +0.2 4,496,553 - LU632_RS23565 0.32 -0.1 4,497,078 + LU632_RS23565 0.88 -0.1 4,497,078 + LU632_RS23565 0.88 -0.5 4,497,078 + LU632_RS23565 0.88 -0.1 4,497,079 - LU632_RS23565 0.88 +0.1 4,497,079 - LU632_RS23565 0.88 +0.0 4,497,082 - LU632_RS23565 0.88 +0.8 4,497,196 - +0.0 4,497,200 + +1.3 4,497,400 - fni LU632_RS23570 0.21 +0.3 4,497,532 - fni LU632_RS23570 0.33 +0.1 4,497,532 - fni LU632_RS23570 0.33 +0.1 4,497,791 + fni LU632_RS23570 0.58 +0.8 4,497,792 - fni LU632_RS23570 0.58 -0.6 4,497,792 - fni LU632_RS23570 0.58 +0.2 4,497,819 - fni LU632_RS23570 0.61 +0.2 4,498,310 - +0.4 4,498,321 + +1.1 4,498,328 - -0.7 4,498,453 + -0.6 4,498,454 - +0.1 4,498,559 + -0.1 4,498,560 - -0.5 4,498,663 - LU632_RS23585 0.14 -1.0 4,498,665 - LU632_RS23585 0.14 -0.5 4,498,665 - LU632_RS23585 0.14 -0.2 4,498,665 - LU632_RS23585 0.14 -1.7 4,498,726 + LU632_RS23585 0.24 +0.4 4,498,727 - LU632_RS23585 0.24 +0.1 4,498,727 - LU632_RS23585 0.24 +0.1 4,498,727 - LU632_RS23585 0.24 +0.5 4,498,727 - LU632_RS23585 0.24 -0.0 4,498,729 - LU632_RS23585 0.24 +0.4 4,498,729 - LU632_RS23585 0.24 +0.2 4,498,831 - LU632_RS23585 0.40 -0.3 4,498,932 + LU632_RS23585 0.55 -1.7 4,498,933 - LU632_RS23585 0.55 -0.7 4,498,933 - LU632_RS23585 0.55 +0.9 4,498,933 - LU632_RS23585 0.55 -0.5 4,498,968 + LU632_RS23585 0.61 +0.2 4,499,020 - LU632_RS23585 0.69 +0.1 4,499,082 - LU632_RS23585 0.78 +0.4 4,499,197 + +0.1 4,499,198 - -0.2 4,499,211 + +0.6 4,499,211 + +0.7 4,499,211 + +0.0 4,499,211 + -0.9
Or see this region's nucleotide sequence