Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tauA and LU632_RS22770 are separated by 349 nucleotides LU632_RS22770 and LU632_RS22775 are separated by 59 nucleotides LU632_RS22775 and LU632_RS22780 are separated by 84 nucleotides
LU632_RS22765: tauA - taurine ABC transporter substrate-binding protein, at 4,334,140 to 4,335,096
tauA
LU632_RS22770: LU632_RS22770 - IS5 family transposase, at 4,335,446 to 4,336,191
_RS22770
LU632_RS22775: LU632_RS22775 - LysE family translocator, at 4,336,251 to 4,336,853
_RS22775
LU632_RS22780: LU632_RS22780 - hydrolase, at 4,336,938 to 4,337,900
_RS22780
Position (kb) 4335
4336
4337 Strain fitness (log2 ratio) -1
0
1
2 at 4334.497 kb on + strand, within tauA at 4334.498 kb on - strand, within tauA at 4334.594 kb on + strand, within tauA at 4334.594 kb on + strand, within tauA at 4334.594 kb on + strand, within tauA at 4334.594 kb on + strand, within tauA at 4334.594 kb on + strand, within tauA at 4334.608 kb on - strand, within tauA at 4334.662 kb on + strand, within tauA at 4334.663 kb on - strand, within tauA at 4334.727 kb on + strand, within tauA at 4334.727 kb on + strand, within tauA at 4334.728 kb on - strand, within tauA at 4334.728 kb on - strand, within tauA at 4334.728 kb on - strand, within tauA at 4334.772 kb on + strand, within tauA at 4334.772 kb on + strand, within tauA at 4334.775 kb on + strand, within tauA at 4334.776 kb on - strand, within tauA at 4335.029 kb on + strand at 4335.214 kb on + strand at 4335.244 kb on + strand at 4335.244 kb on + strand at 4335.244 kb on + strand at 4335.248 kb on + strand at 4335.248 kb on + strand at 4335.274 kb on - strand at 4335.282 kb on - strand at 4335.348 kb on - strand at 4335.348 kb on - strand at 4335.348 kb on - strand at 4335.348 kb on - strand at 4335.348 kb on - strand at 4335.382 kb on + strand at 4336.222 kb on + strand at 4336.222 kb on + strand at 4336.224 kb on + strand at 4336.224 kb on + strand at 4336.337 kb on + strand, within LU632_RS22775 at 4336.410 kb on + strand, within LU632_RS22775 at 4336.410 kb on + strand, within LU632_RS22775 at 4336.410 kb on + strand, within LU632_RS22775 at 4336.411 kb on - strand, within LU632_RS22775 at 4336.496 kb on + strand, within LU632_RS22775 at 4336.507 kb on - strand, within LU632_RS22775 at 4336.781 kb on + strand, within LU632_RS22775 at 4336.781 kb on + strand, within LU632_RS22775 at 4336.781 kb on + strand, within LU632_RS22775 at 4336.781 kb on + strand, within LU632_RS22775 at 4336.782 kb on - strand, within LU632_RS22775 at 4336.784 kb on + strand, within LU632_RS22775 at 4336.784 kb on + strand, within LU632_RS22775 at 4336.784 kb on + strand, within LU632_RS22775 at 4336.784 kb on + strand, within LU632_RS22775 at 4336.784 kb on + strand, within LU632_RS22775 at 4336.785 kb on - strand, within LU632_RS22775 at 4336.785 kb on - strand, within LU632_RS22775 at 4336.785 kb on - strand, within LU632_RS22775 at 4336.787 kb on + strand, within LU632_RS22775 at 4336.787 kb on + strand, within LU632_RS22775 at 4336.787 kb on + strand, within LU632_RS22775 at 4336.787 kb on + strand, within LU632_RS22775 at 4336.788 kb on - strand, within LU632_RS22775 at 4336.788 kb on - strand, within LU632_RS22775 at 4336.788 kb on - strand, within LU632_RS22775 at 4336.788 kb on - strand, within LU632_RS22775 at 4336.788 kb on - strand, within LU632_RS22775 at 4336.854 kb on - strand at 4336.902 kb on + strand at 4336.908 kb on + strand at 4336.928 kb on + strand at 4336.945 kb on + strand at 4336.945 kb on + strand at 4337.125 kb on - strand, within LU632_RS22780 at 4337.168 kb on - strand, within LU632_RS22780
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 4,334,497 + tauA LU632_RS22765 0.37 +0.2 4,334,498 - tauA LU632_RS22765 0.37 +1.1 4,334,594 + tauA LU632_RS22765 0.47 -0.8 4,334,594 + tauA LU632_RS22765 0.47 -0.1 4,334,594 + tauA LU632_RS22765 0.47 -0.6 4,334,594 + tauA LU632_RS22765 0.47 -0.8 4,334,594 + tauA LU632_RS22765 0.47 -1.3 4,334,608 - tauA LU632_RS22765 0.49 +0.3 4,334,662 + tauA LU632_RS22765 0.55 +1.1 4,334,663 - tauA LU632_RS22765 0.55 +0.9 4,334,727 + tauA LU632_RS22765 0.61 +0.0 4,334,727 + tauA LU632_RS22765 0.61 +0.1 4,334,728 - tauA LU632_RS22765 0.61 -0.4 4,334,728 - tauA LU632_RS22765 0.61 +0.1 4,334,728 - tauA LU632_RS22765 0.61 +0.3 4,334,772 + tauA LU632_RS22765 0.66 -0.3 4,334,772 + tauA LU632_RS22765 0.66 -0.0 4,334,775 + tauA LU632_RS22765 0.66 -0.1 4,334,776 - tauA LU632_RS22765 0.66 -1.0 4,335,029 + -0.2 4,335,214 + -0.3 4,335,244 + +0.6 4,335,244 + +0.3 4,335,244 + +1.1 4,335,248 + +0.1 4,335,248 + -0.3 4,335,274 - +0.4 4,335,282 - +0.1 4,335,348 - -0.3 4,335,348 - +0.4 4,335,348 - +0.6 4,335,348 - +0.2 4,335,348 - -0.2 4,335,382 + +0.5 4,336,222 + +0.8 4,336,222 + +0.2 4,336,224 + +0.7 4,336,224 + +0.7 4,336,337 + LU632_RS22775 0.14 +1.1 4,336,410 + LU632_RS22775 0.26 -0.3 4,336,410 + LU632_RS22775 0.26 -1.3 4,336,410 + LU632_RS22775 0.26 +2.7 4,336,411 - LU632_RS22775 0.27 -0.2 4,336,496 + LU632_RS22775 0.41 -0.2 4,336,507 - LU632_RS22775 0.42 +0.6 4,336,781 + LU632_RS22775 0.88 -1.3 4,336,781 + LU632_RS22775 0.88 -1.2 4,336,781 + LU632_RS22775 0.88 -0.3 4,336,781 + LU632_RS22775 0.88 -0.8 4,336,782 - LU632_RS22775 0.88 +0.7 4,336,784 + LU632_RS22775 0.88 -0.1 4,336,784 + LU632_RS22775 0.88 +0.4 4,336,784 + LU632_RS22775 0.88 -0.6 4,336,784 + LU632_RS22775 0.88 +0.1 4,336,784 + LU632_RS22775 0.88 -1.3 4,336,785 - LU632_RS22775 0.89 -0.5 4,336,785 - LU632_RS22775 0.89 -0.3 4,336,785 - LU632_RS22775 0.89 -0.6 4,336,787 + LU632_RS22775 0.89 -0.5 4,336,787 + LU632_RS22775 0.89 +0.1 4,336,787 + LU632_RS22775 0.89 -0.6 4,336,787 + LU632_RS22775 0.89 +0.4 4,336,788 - LU632_RS22775 0.89 +0.2 4,336,788 - LU632_RS22775 0.89 +0.1 4,336,788 - LU632_RS22775 0.89 -0.1 4,336,788 - LU632_RS22775 0.89 -0.6 4,336,788 - LU632_RS22775 0.89 -0.1 4,336,854 - +0.2 4,336,902 + -0.5 4,336,908 + +0.3 4,336,928 + +0.0 4,336,945 + -0.7 4,336,945 + +0.3 4,337,125 - LU632_RS22780 0.19 +0.8 4,337,168 - LU632_RS22780 0.24 +0.7
Or see this region's nucleotide sequence