Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mreB and csrD are separated by 324 nucleotides csrD and LU632_RS21460 are separated by 192 nucleotides
LU632_RS21450: mreB - rod shape-determining protein MreB, at 4,102,412 to 4,103,455
mreB
LU632_RS21455: csrD - RNase E specificity factor CsrD, at 4,103,780 to 4,105,729
csrD
LU632_RS21460: LU632_RS21460 - oxidoreductase, at 4,105,922 to 4,106,896
_RS21460
Position (kb) 4103
4104
4105
4106 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4103.568 kb on + strand at 4103.660 kb on + strand at 4103.660 kb on + strand at 4103.661 kb on - strand at 4103.661 kb on - strand at 4103.661 kb on - strand at 4103.665 kb on + strand at 4103.666 kb on - strand at 4103.666 kb on - strand at 4103.688 kb on - strand at 4103.755 kb on - strand at 4103.791 kb on - strand at 4103.844 kb on + strand at 4103.844 kb on + strand at 4103.845 kb on - strand at 4103.936 kb on - strand at 4103.999 kb on - strand, within csrD at 4104.022 kb on + strand, within csrD at 4104.022 kb on + strand, within csrD at 4104.049 kb on + strand, within csrD at 4104.050 kb on - strand, within csrD at 4104.051 kb on + strand, within csrD at 4104.051 kb on + strand, within csrD at 4104.052 kb on - strand, within csrD at 4104.052 kb on - strand, within csrD at 4104.145 kb on + strand, within csrD at 4104.145 kb on + strand, within csrD at 4104.145 kb on + strand, within csrD at 4104.146 kb on - strand, within csrD at 4104.146 kb on - strand, within csrD at 4104.146 kb on - strand, within csrD at 4104.155 kb on + strand, within csrD at 4104.156 kb on - strand, within csrD at 4104.156 kb on - strand, within csrD at 4104.180 kb on - strand, within csrD at 4104.207 kb on + strand, within csrD at 4104.208 kb on - strand, within csrD at 4104.216 kb on - strand, within csrD at 4104.221 kb on - strand, within csrD at 4104.330 kb on - strand, within csrD at 4104.330 kb on - strand, within csrD at 4104.330 kb on - strand, within csrD at 4104.342 kb on + strand, within csrD at 4104.342 kb on + strand, within csrD at 4104.343 kb on - strand, within csrD at 4104.427 kb on + strand, within csrD at 4104.428 kb on - strand, within csrD at 4104.500 kb on + strand, within csrD at 4104.500 kb on + strand, within csrD at 4104.515 kb on + strand, within csrD at 4104.530 kb on + strand, within csrD at 4104.580 kb on + strand, within csrD at 4104.631 kb on + strand, within csrD at 4104.670 kb on + strand, within csrD at 4104.676 kb on + strand, within csrD at 4104.677 kb on - strand, within csrD at 4104.698 kb on + strand, within csrD at 4104.698 kb on + strand, within csrD at 4104.699 kb on - strand, within csrD at 4104.699 kb on - strand, within csrD at 4104.879 kb on + strand, within csrD at 4104.879 kb on + strand, within csrD at 4104.880 kb on - strand, within csrD at 4104.880 kb on - strand, within csrD at 4104.880 kb on - strand, within csrD at 4104.880 kb on - strand, within csrD at 4105.064 kb on + strand, within csrD at 4105.064 kb on + strand, within csrD at 4105.064 kb on + strand, within csrD at 4105.065 kb on - strand, within csrD at 4105.065 kb on - strand, within csrD at 4105.070 kb on - strand, within csrD at 4105.070 kb on - strand, within csrD at 4105.116 kb on - strand, within csrD at 4105.157 kb on + strand, within csrD at 4105.175 kb on - strand, within csrD at 4105.177 kb on + strand, within csrD at 4105.178 kb on - strand, within csrD at 4105.247 kb on + strand, within csrD at 4105.247 kb on + strand, within csrD at 4105.247 kb on + strand, within csrD at 4105.247 kb on + strand, within csrD at 4105.248 kb on - strand, within csrD at 4105.306 kb on + strand, within csrD at 4105.315 kb on + strand, within csrD at 4105.315 kb on + strand, within csrD at 4105.316 kb on - strand, within csrD at 4105.398 kb on - strand, within csrD at 4105.402 kb on + strand, within csrD at 4105.402 kb on + strand, within csrD at 4105.402 kb on + strand, within csrD at 4105.402 kb on + strand, within csrD at 4105.402 kb on + strand, within csrD at 4105.403 kb on - strand, within csrD at 4105.403 kb on - strand, within csrD at 4105.403 kb on - strand, within csrD at 4105.403 kb on - strand, within csrD at 4105.403 kb on - strand, within csrD at 4105.403 kb on - strand, within csrD at 4105.403 kb on - strand, within csrD at 4105.408 kb on + strand, within csrD at 4105.408 kb on + strand, within csrD at 4105.419 kb on + strand, within csrD at 4105.481 kb on - strand, within csrD at 4105.586 kb on - strand at 4105.605 kb on - strand at 4105.646 kb on + strand at 4105.646 kb on + strand at 4105.646 kb on + strand at 4105.647 kb on - strand at 4105.647 kb on - strand at 4105.649 kb on + strand at 4105.650 kb on - strand at 4105.671 kb on - strand at 4105.721 kb on + strand at 4105.783 kb on + strand at 4105.809 kb on + strand at 4105.809 kb on + strand at 4105.814 kb on + strand at 4105.870 kb on + strand at 4105.892 kb on + strand at 4105.892 kb on + strand at 4105.892 kb on + strand at 4105.893 kb on - strand at 4106.022 kb on + strand, within LU632_RS21460 at 4106.023 kb on - strand, within LU632_RS21460 at 4106.023 kb on - strand, within LU632_RS21460 at 4106.023 kb on - strand, within LU632_RS21460 at 4106.042 kb on + strand, within LU632_RS21460 at 4106.042 kb on + strand, within LU632_RS21460 at 4106.081 kb on - strand, within LU632_RS21460 at 4106.177 kb on - strand, within LU632_RS21460 at 4106.291 kb on - strand, within LU632_RS21460 at 4106.319 kb on + strand, within LU632_RS21460 at 4106.500 kb on - strand, within LU632_RS21460 at 4106.504 kb on + strand, within LU632_RS21460 at 4106.504 kb on + strand, within LU632_RS21460 at 4106.504 kb on + strand, within LU632_RS21460 at 4106.504 kb on + strand, within LU632_RS21460 at 4106.505 kb on - strand, within LU632_RS21460 at 4106.505 kb on - strand, within LU632_RS21460 at 4106.567 kb on + strand, within LU632_RS21460 at 4106.567 kb on + strand, within LU632_RS21460 at 4106.568 kb on - strand, within LU632_RS21460 at 4106.568 kb on - strand, within LU632_RS21460 at 4106.571 kb on + strand, within LU632_RS21460 at 4106.571 kb on + strand, within LU632_RS21460 at 4106.572 kb on - strand, within LU632_RS21460 at 4106.572 kb on - strand, within LU632_RS21460 at 4106.572 kb on - strand, within LU632_RS21460 at 4106.572 kb on - strand, within LU632_RS21460 at 4106.572 kb on - strand, within LU632_RS21460 at 4106.572 kb on - strand, within LU632_RS21460 at 4106.572 kb on - strand, within LU632_RS21460 at 4106.685 kb on + strand, within LU632_RS21460 at 4106.686 kb on - strand, within LU632_RS21460 at 4106.719 kb on + strand, within LU632_RS21460 at 4106.720 kb on - strand, within LU632_RS21460
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 4,103,568 + +0.5 4,103,660 + -0.0 4,103,660 + -0.4 4,103,661 - +1.3 4,103,661 - +0.2 4,103,661 - +0.2 4,103,665 + -0.0 4,103,666 - +1.1 4,103,666 - +0.6 4,103,688 - +0.2 4,103,755 - +0.4 4,103,791 - -0.2 4,103,844 + -0.4 4,103,844 + -0.3 4,103,845 - -0.2 4,103,936 - -0.2 4,103,999 - csrD LU632_RS21455 0.11 -0.2 4,104,022 + csrD LU632_RS21455 0.12 -0.0 4,104,022 + csrD LU632_RS21455 0.12 -1.8 4,104,049 + csrD LU632_RS21455 0.14 -0.3 4,104,050 - csrD LU632_RS21455 0.14 +0.1 4,104,051 + csrD LU632_RS21455 0.14 +0.0 4,104,051 + csrD LU632_RS21455 0.14 -0.9 4,104,052 - csrD LU632_RS21455 0.14 -0.6 4,104,052 - csrD LU632_RS21455 0.14 -0.7 4,104,145 + csrD LU632_RS21455 0.19 -0.3 4,104,145 + csrD LU632_RS21455 0.19 -0.3 4,104,145 + csrD LU632_RS21455 0.19 -0.4 4,104,146 - csrD LU632_RS21455 0.19 +0.3 4,104,146 - csrD LU632_RS21455 0.19 -2.4 4,104,146 - csrD LU632_RS21455 0.19 +0.6 4,104,155 + csrD LU632_RS21455 0.19 -0.4 4,104,156 - csrD LU632_RS21455 0.19 +0.1 4,104,156 - csrD LU632_RS21455 0.19 +3.1 4,104,180 - csrD LU632_RS21455 0.21 -0.9 4,104,207 + csrD LU632_RS21455 0.22 -0.3 4,104,208 - csrD LU632_RS21455 0.22 -1.0 4,104,216 - csrD LU632_RS21455 0.22 -0.6 4,104,221 - csrD LU632_RS21455 0.23 +0.0 4,104,330 - csrD LU632_RS21455 0.28 -0.2 4,104,330 - csrD LU632_RS21455 0.28 +0.5 4,104,330 - csrD LU632_RS21455 0.28 -0.5 4,104,342 + csrD LU632_RS21455 0.29 -0.3 4,104,342 + csrD LU632_RS21455 0.29 +0.5 4,104,343 - csrD LU632_RS21455 0.29 -0.2 4,104,427 + csrD LU632_RS21455 0.33 +1.1 4,104,428 - csrD LU632_RS21455 0.33 -0.0 4,104,500 + csrD LU632_RS21455 0.37 -0.2 4,104,500 + csrD LU632_RS21455 0.37 -0.6 4,104,515 + csrD LU632_RS21455 0.38 -1.6 4,104,530 + csrD LU632_RS21455 0.38 +0.5 4,104,580 + csrD LU632_RS21455 0.41 -0.3 4,104,631 + csrD LU632_RS21455 0.44 +0.2 4,104,670 + csrD LU632_RS21455 0.46 -0.5 4,104,676 + csrD LU632_RS21455 0.46 +0.4 4,104,677 - csrD LU632_RS21455 0.46 -0.4 4,104,698 + csrD LU632_RS21455 0.47 -1.0 4,104,698 + csrD LU632_RS21455 0.47 -0.8 4,104,699 - csrD LU632_RS21455 0.47 -1.0 4,104,699 - csrD LU632_RS21455 0.47 -0.5 4,104,879 + csrD LU632_RS21455 0.56 +0.4 4,104,879 + csrD LU632_RS21455 0.56 +0.8 4,104,880 - csrD LU632_RS21455 0.56 +0.1 4,104,880 - csrD LU632_RS21455 0.56 -0.8 4,104,880 - csrD LU632_RS21455 0.56 -0.6 4,104,880 - csrD LU632_RS21455 0.56 -1.1 4,105,064 + csrD LU632_RS21455 0.66 -2.1 4,105,064 + csrD LU632_RS21455 0.66 -1.8 4,105,064 + csrD LU632_RS21455 0.66 -0.8 4,105,065 - csrD LU632_RS21455 0.66 -1.5 4,105,065 - csrD LU632_RS21455 0.66 +0.0 4,105,070 - csrD LU632_RS21455 0.66 -0.4 4,105,070 - csrD LU632_RS21455 0.66 +0.1 4,105,116 - csrD LU632_RS21455 0.69 +0.1 4,105,157 + csrD LU632_RS21455 0.71 -0.3 4,105,175 - csrD LU632_RS21455 0.72 -0.5 4,105,177 + csrD LU632_RS21455 0.72 -0.5 4,105,178 - csrD LU632_RS21455 0.72 -0.4 4,105,247 + csrD LU632_RS21455 0.75 -1.1 4,105,247 + csrD LU632_RS21455 0.75 +0.2 4,105,247 + csrD LU632_RS21455 0.75 -0.2 4,105,247 + csrD LU632_RS21455 0.75 -1.9 4,105,248 - csrD LU632_RS21455 0.75 +0.1 4,105,306 + csrD LU632_RS21455 0.78 -0.3 4,105,315 + csrD LU632_RS21455 0.79 +0.3 4,105,315 + csrD LU632_RS21455 0.79 +0.3 4,105,316 - csrD LU632_RS21455 0.79 +0.6 4,105,398 - csrD LU632_RS21455 0.83 -0.9 4,105,402 + csrD LU632_RS21455 0.83 -0.1 4,105,402 + csrD LU632_RS21455 0.83 -0.4 4,105,402 + csrD LU632_RS21455 0.83 +0.1 4,105,402 + csrD LU632_RS21455 0.83 -0.1 4,105,402 + csrD LU632_RS21455 0.83 +0.3 4,105,403 - csrD LU632_RS21455 0.83 +1.1 4,105,403 - csrD LU632_RS21455 0.83 -0.9 4,105,403 - csrD LU632_RS21455 0.83 +0.1 4,105,403 - csrD LU632_RS21455 0.83 -0.6 4,105,403 - csrD LU632_RS21455 0.83 -0.3 4,105,403 - csrD LU632_RS21455 0.83 -0.9 4,105,403 - csrD LU632_RS21455 0.83 -0.6 4,105,408 + csrD LU632_RS21455 0.83 -0.0 4,105,408 + csrD LU632_RS21455 0.83 -0.1 4,105,419 + csrD LU632_RS21455 0.84 -0.9 4,105,481 - csrD LU632_RS21455 0.87 -0.4 4,105,586 - -0.5 4,105,605 - -0.9 4,105,646 + +0.2 4,105,646 + -0.8 4,105,646 + +0.6 4,105,647 - -0.4 4,105,647 - -0.1 4,105,649 + -0.9 4,105,650 - -0.9 4,105,671 - -0.1 4,105,721 + -0.9 4,105,783 + -1.0 4,105,809 + -0.5 4,105,809 + -0.5 4,105,814 + -1.8 4,105,870 + -0.3 4,105,892 + +0.4 4,105,892 + -0.7 4,105,892 + -0.6 4,105,893 - -1.5 4,106,022 + LU632_RS21460 0.10 +1.4 4,106,023 - LU632_RS21460 0.10 -0.1 4,106,023 - LU632_RS21460 0.10 +0.1 4,106,023 - LU632_RS21460 0.10 +0.1 4,106,042 + LU632_RS21460 0.12 +1.4 4,106,042 + LU632_RS21460 0.12 +1.2 4,106,081 - LU632_RS21460 0.16 -0.2 4,106,177 - LU632_RS21460 0.26 -0.4 4,106,291 - LU632_RS21460 0.38 -1.2 4,106,319 + LU632_RS21460 0.41 +0.4 4,106,500 - LU632_RS21460 0.59 +0.1 4,106,504 + LU632_RS21460 0.60 +0.1 4,106,504 + LU632_RS21460 0.60 +0.4 4,106,504 + LU632_RS21460 0.60 +0.5 4,106,504 + LU632_RS21460 0.60 +0.2 4,106,505 - LU632_RS21460 0.60 -1.9 4,106,505 - LU632_RS21460 0.60 -0.7 4,106,567 + LU632_RS21460 0.66 -0.5 4,106,567 + LU632_RS21460 0.66 +0.4 4,106,568 - LU632_RS21460 0.66 -0.4 4,106,568 - LU632_RS21460 0.66 +0.4 4,106,571 + LU632_RS21460 0.67 +0.6 4,106,571 + LU632_RS21460 0.67 -0.8 4,106,572 - LU632_RS21460 0.67 -0.3 4,106,572 - LU632_RS21460 0.67 -0.2 4,106,572 - LU632_RS21460 0.67 +0.3 4,106,572 - LU632_RS21460 0.67 +0.2 4,106,572 - LU632_RS21460 0.67 -0.8 4,106,572 - LU632_RS21460 0.67 -0.1 4,106,572 - LU632_RS21460 0.67 +0.3 4,106,685 + LU632_RS21460 0.78 +0.4 4,106,686 - LU632_RS21460 0.78 +0.1 4,106,719 + LU632_RS21460 0.82 +0.5 4,106,720 - LU632_RS21460 0.82 +0.3
Or see this region's nucleotide sequence