Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09670

Experiment: HBM-Sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	HBM-Sucrose
1,831,962	+	rlmC	LU632_RS09660	0.88	+0.5
1,831,962	+	rlmC	LU632_RS09660	0.88	+0.1
1,831,962	+	rlmC	LU632_RS09660	0.88	+0.5
1,831,962	+	rlmC	LU632_RS09660	0.88	+0.2
1,831,963	-	rlmC	LU632_RS09660	0.88	-0.2
1,831,963	-	rlmC	LU632_RS09660	0.88	+1.5
1,832,020	+				+1.2
1,832,020	+				+1.2
1,832,020	+				-0.1
1,832,020	+				-0.9
1,832,021	-				+0.7
1,832,021	-				+0.6
1,832,048	-				-0.2
1,832,050	-				-0.2
1,832,189	+				+0.6
1,832,190	-				-0.6
1,832,358	-		LU632_RS09665	0.37	+0.7
1,832,400	+		LU632_RS09665	0.45	+0.2
1,832,400	+		LU632_RS09665	0.45	-1.1
1,832,401	-		LU632_RS09665	0.45	+0.4
1,832,403	-		LU632_RS09665	0.46	+1.2
1,832,403	-		LU632_RS09665	0.46	-0.0
1,832,460	+		LU632_RS09665	0.57	+0.6
1,832,527	+		LU632_RS09665	0.70	+0.3
1,832,528	-		LU632_RS09665	0.70	-0.0
1,832,535	-		LU632_RS09665	0.71	-0.1
1,832,571	+		LU632_RS09665	0.78	-0.3
1,832,571	+		LU632_RS09665	0.78	-0.3
1,832,572	-		LU632_RS09665	0.78	+0.5
1,832,572	-		LU632_RS09665	0.78	+0.1
1,832,595	-		LU632_RS09665	0.83	-1.6
1,832,675	+				+3.3
1,832,675	+				+0.3
1,832,676	-				-0.9
1,832,745	+				-1.4
1,832,746	-				-0.5
1,832,810	-				-0.9
1,832,813	+				+1.5
1,832,844	+				+0.2
1,832,845	-				+0.4
1,832,910	-				+0.2
1,832,910	-				-0.3
1,832,910	-				+0.3
1,832,910	-				-0.2
1,832,910	-				-2.5
1,832,910	-				+0.6
1,832,910	-				+0.3
1,832,988	+				-0.9
1,833,020	-	artM	LU632_RS09670	0.12	-0.3
1,833,055	+	artM	LU632_RS09670	0.17	-1.1
1,833,056	-	artM	LU632_RS09670	0.17	-0.0
1,833,125	+	artM	LU632_RS09670	0.28	+0.5
1,833,125	+	artM	LU632_RS09670	0.28	-0.7
1,833,126	-	artM	LU632_RS09670	0.28	-1.3
1,833,142	-	artM	LU632_RS09670	0.30	-0.7
1,833,211	-	artM	LU632_RS09670	0.41	+0.3
1,833,216	-	artM	LU632_RS09670	0.41	-1.1
1,833,404	-	artM	LU632_RS09670	0.69	+0.0
1,833,404	-	artM	LU632_RS09670	0.69	+0.4
1,833,406	+	artM	LU632_RS09670	0.70	-0.7
1,833,406	+	artM	LU632_RS09670	0.70	+0.1
1,833,407	-	artM	LU632_RS09670	0.70	+0.3
1,833,595	-				-0.7
1,833,599	-				+0.3
1,833,599	-				+1.4
1,833,655	+				+0.4
1,833,656	-				-0.3
1,833,656	-				-0.1
1,833,690	+	artQ	LU632_RS09675	0.12	-1.5
1,833,695	-	artQ	LU632_RS09675	0.13	+0.1
1,833,709	+	artQ	LU632_RS09675	0.15	+0.2
1,833,710	-	artQ	LU632_RS09675	0.15	+1.7
1,833,711	+	artQ	LU632_RS09675	0.15	+0.7
1,833,746	-	artQ	LU632_RS09675	0.20	-0.9
1,833,746	-	artQ	LU632_RS09675	0.20	+0.5
1,833,763	+	artQ	LU632_RS09675	0.22	-0.9
1,833,982	-	artQ	LU632_RS09675	0.53	+0.7
1,834,312	-				-0.5
1,834,354	+				+0.3
1,834,354	+				-0.0
1,834,354	+				+0.7
1,834,355	-				-0.2
1,834,355	-				-0.1
1,834,417	-	artJ	LU632_RS09680	0.12	+0.1
1,834,598	-	artJ	LU632_RS09680	0.36	-0.5
1,834,607	-	artJ	LU632_RS09680	0.38	-0.4