Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09125

Experiment: HBM-Sucrose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS09120 and bioA overlap by 10 nucleotidesbioA and bioB are separated by 90 nucleotides LU632_RS09120: LU632_RS09120 - fimbrial protein, at 1,716,712 to 1,717,761 _RS09120 LU632_RS09125: bioA - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 1,717,752 to 1,719,053 bioA LU632_RS09130: bioB - biotin synthase BioB, at 1,719,144 to 1,720,175 bioB Position (kb) 1717 1718 1719 1720Strain fitness (log2 ratio) -2 -1 0 1at 1716.935 kb on - strand, within LU632_RS09120at 1717.014 kb on + strand, within LU632_RS09120at 1717.021 kb on + strand, within LU632_RS09120at 1717.021 kb on + strand, within LU632_RS09120at 1717.023 kb on + strand, within LU632_RS09120at 1717.024 kb on - strand, within LU632_RS09120at 1717.024 kb on - strand, within LU632_RS09120at 1717.039 kb on + strand, within LU632_RS09120at 1717.081 kb on + strand, within LU632_RS09120at 1717.081 kb on + strand, within LU632_RS09120at 1717.081 kb on + strand, within LU632_RS09120at 1717.082 kb on - strand, within LU632_RS09120at 1717.082 kb on - strand, within LU632_RS09120at 1717.135 kb on + strand, within LU632_RS09120at 1717.135 kb on + strand, within LU632_RS09120at 1717.135 kb on + strand, within LU632_RS09120at 1717.136 kb on - strand, within LU632_RS09120at 1717.138 kb on + strand, within LU632_RS09120at 1717.138 kb on + strand, within LU632_RS09120at 1717.138 kb on + strand, within LU632_RS09120at 1717.139 kb on - strand, within LU632_RS09120at 1717.139 kb on - strand, within LU632_RS09120at 1717.143 kb on + strand, within LU632_RS09120at 1717.143 kb on + strand, within LU632_RS09120at 1717.143 kb on + strand, within LU632_RS09120at 1717.144 kb on - strand, within LU632_RS09120at 1717.144 kb on - strand, within LU632_RS09120at 1717.181 kb on + strand, within LU632_RS09120at 1717.181 kb on + strand, within LU632_RS09120at 1717.184 kb on + strand, within LU632_RS09120at 1717.184 kb on + strand, within LU632_RS09120at 1717.184 kb on + strand, within LU632_RS09120at 1717.184 kb on + strand, within LU632_RS09120at 1717.185 kb on - strand, within LU632_RS09120at 1717.185 kb on - strand, within LU632_RS09120at 1717.185 kb on - strand, within LU632_RS09120at 1717.185 kb on - strand, within LU632_RS09120at 1717.185 kb on - strand, within LU632_RS09120at 1717.277 kb on - strand, within LU632_RS09120at 1717.277 kb on - strand, within LU632_RS09120at 1717.308 kb on + strand, within LU632_RS09120at 1717.308 kb on + strand, within LU632_RS09120at 1717.467 kb on - strand, within LU632_RS09120at 1717.510 kb on + strand, within LU632_RS09120at 1717.510 kb on + strand, within LU632_RS09120at 1717.511 kb on - strand, within LU632_RS09120at 1717.511 kb on - strand, within LU632_RS09120at 1717.511 kb on - strand, within LU632_RS09120at 1717.512 kb on + strand, within LU632_RS09120at 1717.512 kb on + strand, within LU632_RS09120at 1717.513 kb on - strand, within LU632_RS09120at 1717.726 kb on - strandat 1717.738 kb on - strandat 1717.753 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Sucrose
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1,716,935 - LU632_RS09120 0.21 +0.6
1,717,014 + LU632_RS09120 0.29 -0.3
1,717,021 + LU632_RS09120 0.29 -0.2
1,717,021 + LU632_RS09120 0.29 -0.2
1,717,023 + LU632_RS09120 0.30 -0.1
1,717,024 - LU632_RS09120 0.30 -0.2
1,717,024 - LU632_RS09120 0.30 +0.8
1,717,039 + LU632_RS09120 0.31 -0.3
1,717,081 + LU632_RS09120 0.35 -0.8
1,717,081 + LU632_RS09120 0.35 -1.8
1,717,081 + LU632_RS09120 0.35 +0.3
1,717,082 - LU632_RS09120 0.35 +0.0
1,717,082 - LU632_RS09120 0.35 -0.2
1,717,135 + LU632_RS09120 0.40 +0.3
1,717,135 + LU632_RS09120 0.40 -0.6
1,717,135 + LU632_RS09120 0.40 +0.3
1,717,136 - LU632_RS09120 0.40 +0.1
1,717,138 + LU632_RS09120 0.41 -0.9
1,717,138 + LU632_RS09120 0.41 -0.8
1,717,138 + LU632_RS09120 0.41 -0.2
1,717,139 - LU632_RS09120 0.41 -0.2
1,717,139 - LU632_RS09120 0.41 -0.1
1,717,143 + LU632_RS09120 0.41 +0.4
1,717,143 + LU632_RS09120 0.41 +0.2
1,717,143 + LU632_RS09120 0.41 +0.1
1,717,144 - LU632_RS09120 0.41 -0.0
1,717,144 - LU632_RS09120 0.41 +0.6
1,717,181 + LU632_RS09120 0.45 -0.8
1,717,181 + LU632_RS09120 0.45 +0.4
1,717,184 + LU632_RS09120 0.45 -0.4
1,717,184 + LU632_RS09120 0.45 +1.3
1,717,184 + LU632_RS09120 0.45 -1.2
1,717,184 + LU632_RS09120 0.45 +0.0
1,717,185 - LU632_RS09120 0.45 +0.4
1,717,185 - LU632_RS09120 0.45 -0.1
1,717,185 - LU632_RS09120 0.45 +0.3
1,717,185 - LU632_RS09120 0.45 -2.2
1,717,185 - LU632_RS09120 0.45 +1.0
1,717,277 - LU632_RS09120 0.54 +0.2
1,717,277 - LU632_RS09120 0.54 -0.6
1,717,308 + LU632_RS09120 0.57 -0.6
1,717,308 + LU632_RS09120 0.57 +0.5
1,717,467 - LU632_RS09120 0.72 +0.7
1,717,510 + LU632_RS09120 0.76 +0.2
1,717,510 + LU632_RS09120 0.76 -0.6
1,717,511 - LU632_RS09120 0.76 +0.5
1,717,511 - LU632_RS09120 0.76 -0.4
1,717,511 - LU632_RS09120 0.76 +0.3
1,717,512 + LU632_RS09120 0.76 -1.9
1,717,512 + LU632_RS09120 0.76 +0.3
1,717,513 - LU632_RS09120 0.76 -0.0
1,717,726 - +0.4
1,717,738 - +0.2
1,717,753 + -0.5

Or see this region's nucleotide sequence