Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS06375 and LU632_RS06380 overlap by 11 nucleotides LU632_RS06380 and LU632_RS06385 are separated by 50 nucleotides LU632_RS06385 and queE are separated by 115 nucleotides queE and queD are separated by 16 nucleotides
LU632_RS06375: LU632_RS06375 - acyltransferase, at 1,226,238 to 1,227,095
_RS06375
LU632_RS06380: LU632_RS06380 - hypothetical protein, at 1,227,085 to 1,227,339
_RS06380
LU632_RS06385: LU632_RS06385 - hypothetical protein, at 1,227,390 to 1,228,067
_RS06385
LU632_RS06390: queE - 7-carboxy-7-deazaguanine synthase QueE, at 1,228,183 to 1,228,854
queE
LU632_RS06395: queD - 6-carboxytetrahydropterin synthase QueD, at 1,228,871 to 1,229,233
queD
Position (kb) 1227
1228
1229 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1226.419 kb on + strand, within LU632_RS06375 at 1226.464 kb on + strand, within LU632_RS06375 at 1226.464 kb on + strand, within LU632_RS06375 at 1226.464 kb on + strand, within LU632_RS06375 at 1226.465 kb on - strand, within LU632_RS06375 at 1226.496 kb on - strand, within LU632_RS06375 at 1226.515 kb on + strand, within LU632_RS06375 at 1226.516 kb on - strand, within LU632_RS06375 at 1226.528 kb on + strand, within LU632_RS06375 at 1226.530 kb on + strand, within LU632_RS06375 at 1226.592 kb on - strand, within LU632_RS06375 at 1226.622 kb on + strand, within LU632_RS06375 at 1226.622 kb on + strand, within LU632_RS06375 at 1226.622 kb on + strand, within LU632_RS06375 at 1226.622 kb on + strand, within LU632_RS06375 at 1226.623 kb on - strand, within LU632_RS06375 at 1226.623 kb on - strand, within LU632_RS06375 at 1226.624 kb on + strand, within LU632_RS06375 at 1226.630 kb on - strand, within LU632_RS06375 at 1226.708 kb on - strand, within LU632_RS06375 at 1226.708 kb on - strand, within LU632_RS06375 at 1226.760 kb on + strand, within LU632_RS06375 at 1226.760 kb on + strand, within LU632_RS06375 at 1226.761 kb on - strand, within LU632_RS06375 at 1226.762 kb on + strand, within LU632_RS06375 at 1226.762 kb on + strand, within LU632_RS06375 at 1226.763 kb on - strand, within LU632_RS06375 at 1226.854 kb on + strand, within LU632_RS06375 at 1226.888 kb on + strand, within LU632_RS06375 at 1226.998 kb on + strand, within LU632_RS06375 at 1227.033 kb on + strand at 1227.034 kb on - strand at 1227.034 kb on - strand at 1227.164 kb on - strand, within LU632_RS06380 at 1227.246 kb on - strand, within LU632_RS06380 at 1227.268 kb on + strand, within LU632_RS06380 at 1227.269 kb on - strand, within LU632_RS06380 at 1227.338 kb on - strand at 1227.338 kb on - strand at 1227.398 kb on + strand at 1227.398 kb on + strand at 1227.399 kb on - strand at 1227.432 kb on + strand at 1227.432 kb on + strand at 1227.432 kb on + strand at 1227.432 kb on + strand at 1227.433 kb on - strand at 1227.433 kb on - strand at 1227.466 kb on - strand, within LU632_RS06385 at 1227.469 kb on + strand, within LU632_RS06385 at 1227.470 kb on - strand, within LU632_RS06385 at 1227.470 kb on - strand, within LU632_RS06385 at 1227.497 kb on + strand, within LU632_RS06385 at 1227.498 kb on - strand, within LU632_RS06385 at 1227.498 kb on - strand, within LU632_RS06385 at 1227.498 kb on - strand, within LU632_RS06385 at 1227.576 kb on + strand, within LU632_RS06385 at 1227.625 kb on - strand, within LU632_RS06385 at 1227.625 kb on - strand, within LU632_RS06385 at 1227.665 kb on + strand, within LU632_RS06385 at 1227.746 kb on + strand, within LU632_RS06385 at 1227.746 kb on + strand, within LU632_RS06385 at 1227.746 kb on + strand, within LU632_RS06385 at 1227.747 kb on - strand, within LU632_RS06385 at 1227.747 kb on - strand, within LU632_RS06385 at 1227.826 kb on + strand, within LU632_RS06385 at 1227.840 kb on - strand, within LU632_RS06385 at 1227.906 kb on + strand, within LU632_RS06385 at 1227.906 kb on + strand, within LU632_RS06385 at 1227.906 kb on + strand, within LU632_RS06385 at 1227.906 kb on + strand, within LU632_RS06385 at 1227.907 kb on - strand, within LU632_RS06385 at 1227.909 kb on - strand, within LU632_RS06385 at 1227.956 kb on - strand, within LU632_RS06385 at 1228.061 kb on + strand at 1228.061 kb on + strand at 1228.061 kb on + strand at 1228.062 kb on - strand at 1228.065 kb on + strand at 1228.065 kb on - strand at 1228.066 kb on - strand at 1228.094 kb on - strand at 1228.146 kb on + strand at 1228.234 kb on + strand at 1228.234 kb on + strand at 1228.235 kb on - strand at 1228.235 kb on - strand at 1228.413 kb on + strand, within queE at 1228.414 kb on - strand, within queE at 1228.414 kb on - strand, within queE at 1228.502 kb on - strand, within queE at 1228.552 kb on - strand, within queE at 1228.552 kb on - strand, within queE at 1228.602 kb on + strand, within queE at 1228.603 kb on - strand, within queE at 1228.603 kb on - strand, within queE at 1228.655 kb on + strand, within queE at 1228.655 kb on + strand, within queE at 1228.656 kb on - strand, within queE at 1228.786 kb on - strand, within queE at 1228.806 kb on + strand at 1228.834 kb on - strand at 1228.837 kb on + strand at 1228.842 kb on + strand at 1228.843 kb on - strand at 1228.845 kb on + strand at 1228.845 kb on + strand at 1229.009 kb on - strand, within queD at 1229.019 kb on + strand, within queD at 1229.019 kb on + strand, within queD at 1229.019 kb on + strand, within queD at 1229.020 kb on - strand, within queD at 1229.020 kb on - strand, within queD at 1229.020 kb on - strand, within queD at 1229.020 kb on - strand, within queD at 1229.020 kb on - strand, within queD at 1229.040 kb on + strand, within queD at 1229.040 kb on + strand, within queD at 1229.040 kb on + strand, within queD at 1229.040 kb on + strand, within queD at 1229.041 kb on - strand, within queD at 1229.043 kb on - strand, within queD
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 1,226,419 + LU632_RS06375 0.21 -0.3 1,226,464 + LU632_RS06375 0.26 +0.2 1,226,464 + LU632_RS06375 0.26 -0.1 1,226,464 + LU632_RS06375 0.26 +1.3 1,226,465 - LU632_RS06375 0.26 +0.2 1,226,496 - LU632_RS06375 0.30 -0.7 1,226,515 + LU632_RS06375 0.32 +0.1 1,226,516 - LU632_RS06375 0.32 -0.1 1,226,528 + LU632_RS06375 0.34 +0.2 1,226,530 + LU632_RS06375 0.34 +0.6 1,226,592 - LU632_RS06375 0.41 +0.3 1,226,622 + LU632_RS06375 0.45 +1.0 1,226,622 + LU632_RS06375 0.45 +0.0 1,226,622 + LU632_RS06375 0.45 +0.7 1,226,622 + LU632_RS06375 0.45 -0.1 1,226,623 - LU632_RS06375 0.45 +0.9 1,226,623 - LU632_RS06375 0.45 +0.9 1,226,624 + LU632_RS06375 0.45 +0.2 1,226,630 - LU632_RS06375 0.46 -0.2 1,226,708 - LU632_RS06375 0.55 +0.3 1,226,708 - LU632_RS06375 0.55 -0.6 1,226,760 + LU632_RS06375 0.61 +0.6 1,226,760 + LU632_RS06375 0.61 -0.4 1,226,761 - LU632_RS06375 0.61 +0.1 1,226,762 + LU632_RS06375 0.61 +0.1 1,226,762 + LU632_RS06375 0.61 -0.3 1,226,763 - LU632_RS06375 0.61 +0.1 1,226,854 + LU632_RS06375 0.72 -0.1 1,226,888 + LU632_RS06375 0.76 +0.1 1,226,998 + LU632_RS06375 0.89 -0.3 1,227,033 + +0.5 1,227,034 - +0.1 1,227,034 - +0.2 1,227,164 - LU632_RS06380 0.31 +1.5 1,227,246 - LU632_RS06380 0.63 +1.0 1,227,268 + LU632_RS06380 0.72 +0.9 1,227,269 - LU632_RS06380 0.72 -0.3 1,227,338 - -0.9 1,227,338 - +0.8 1,227,398 + -0.5 1,227,398 + -0.3 1,227,399 - +0.0 1,227,432 + -0.5 1,227,432 + -0.5 1,227,432 + -0.1 1,227,432 + +0.1 1,227,433 - -0.2 1,227,433 - -0.1 1,227,466 - LU632_RS06385 0.11 +0.7 1,227,469 + LU632_RS06385 0.12 -0.6 1,227,470 - LU632_RS06385 0.12 -0.3 1,227,470 - LU632_RS06385 0.12 -0.1 1,227,497 + LU632_RS06385 0.16 -0.4 1,227,498 - LU632_RS06385 0.16 -0.0 1,227,498 - LU632_RS06385 0.16 +0.8 1,227,498 - LU632_RS06385 0.16 -0.3 1,227,576 + LU632_RS06385 0.27 -1.1 1,227,625 - LU632_RS06385 0.35 -0.7 1,227,625 - LU632_RS06385 0.35 +1.1 1,227,665 + LU632_RS06385 0.41 +0.5 1,227,746 + LU632_RS06385 0.53 -3.3 1,227,746 + LU632_RS06385 0.53 +0.1 1,227,746 + LU632_RS06385 0.53 +0.1 1,227,747 - LU632_RS06385 0.53 +0.1 1,227,747 - LU632_RS06385 0.53 +0.0 1,227,826 + LU632_RS06385 0.64 +0.1 1,227,840 - LU632_RS06385 0.66 +1.3 1,227,906 + LU632_RS06385 0.76 +0.8 1,227,906 + LU632_RS06385 0.76 -0.7 1,227,906 + LU632_RS06385 0.76 +0.6 1,227,906 + LU632_RS06385 0.76 +0.1 1,227,907 - LU632_RS06385 0.76 +0.1 1,227,909 - LU632_RS06385 0.77 -1.7 1,227,956 - LU632_RS06385 0.83 -0.9 1,228,061 + -0.2 1,228,061 + -0.2 1,228,061 + -0.5 1,228,062 - +1.3 1,228,065 + -0.4 1,228,065 - +0.0 1,228,066 - -0.4 1,228,094 - +0.2 1,228,146 + +0.9 1,228,234 + +1.3 1,228,234 + +0.2 1,228,235 - +0.3 1,228,235 - +0.3 1,228,413 + queE LU632_RS06390 0.34 -0.3 1,228,414 - queE LU632_RS06390 0.34 +0.2 1,228,414 - queE LU632_RS06390 0.34 +0.6 1,228,502 - queE LU632_RS06390 0.47 +0.6 1,228,552 - queE LU632_RS06390 0.55 +1.7 1,228,552 - queE LU632_RS06390 0.55 +2.5 1,228,602 + queE LU632_RS06390 0.62 -0.4 1,228,603 - queE LU632_RS06390 0.62 +0.3 1,228,603 - queE LU632_RS06390 0.62 -0.1 1,228,655 + queE LU632_RS06390 0.70 +0.6 1,228,655 + queE LU632_RS06390 0.70 -0.1 1,228,656 - queE LU632_RS06390 0.70 -0.1 1,228,786 - queE LU632_RS06390 0.90 +0.9 1,228,806 + +0.2 1,228,834 - +0.0 1,228,837 + +1.3 1,228,842 + -0.3 1,228,843 - +0.0 1,228,845 + -0.3 1,228,845 + -0.3 1,229,009 - queD LU632_RS06395 0.38 +1.3 1,229,019 + queD LU632_RS06395 0.41 +0.9 1,229,019 + queD LU632_RS06395 0.41 -0.1 1,229,019 + queD LU632_RS06395 0.41 +1.1 1,229,020 - queD LU632_RS06395 0.41 +0.3 1,229,020 - queD LU632_RS06395 0.41 +0.1 1,229,020 - queD LU632_RS06395 0.41 +0.8 1,229,020 - queD LU632_RS06395 0.41 +0.9 1,229,020 - queD LU632_RS06395 0.41 +0.1 1,229,040 + queD LU632_RS06395 0.47 +0.9 1,229,040 + queD LU632_RS06395 0.47 +0.2 1,229,040 + queD LU632_RS06395 0.47 +0.4 1,229,040 + queD LU632_RS06395 0.47 -0.1 1,229,041 - queD LU632_RS06395 0.47 -0.1 1,229,043 - queD LU632_RS06395 0.47 -0.0
Or see this region's nucleotide sequence