Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04905

Experiment: HBM-Sucrose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04890 and LU632_RS04895 are separated by 77 nucleotidesLU632_RS04895 and LU632_RS04900 are separated by 12 nucleotidesLU632_RS04900 and LU632_RS04905 are separated by 13 nucleotidesLU632_RS04905 and LU632_RS04910 overlap by 20 nucleotidesLU632_RS04910 and LU632_RS04915 are separated by 47 nucleotides LU632_RS04890: LU632_RS04890 - STY4534 family ICE replication protein, at 956,410 to 956,874 _RS04890 LU632_RS04895: LU632_RS04895 - hypothetical protein, at 956,952 to 957,155 _RS04895 LU632_RS04900: LU632_RS04900 - single-stranded DNA-binding protein, at 957,168 to 957,757 _RS04900 LU632_RS04905: LU632_RS04905 - DUF4160 domain-containing protein, at 957,771 to 958,007 _RS04905 LU632_RS04910: LU632_RS04910 - DUF2442 domain-containing protein, at 957,988 to 958,251 _RS04910 LU632_RS04915: LU632_RS04915 - IS4 family transposase, at 958,299 to 959,621 _RS04915 Position (kb) 957 958 959Strain fitness (log2 ratio) -2 -1 0 1 2at 956.781 kb on - strand, within LU632_RS04890at 956.797 kb on + strand, within LU632_RS04890at 956.798 kb on - strand, within LU632_RS04890at 956.798 kb on - strand, within LU632_RS04890at 956.799 kb on + strand, within LU632_RS04890at 956.799 kb on + strand, within LU632_RS04890at 956.800 kb on - strand, within LU632_RS04890at 956.839 kb on - strandat 956.936 kb on - strandat 956.939 kb on - strandat 957.033 kb on + strand, within LU632_RS04895at 957.033 kb on + strand, within LU632_RS04895at 957.034 kb on - strand, within LU632_RS04895at 957.034 kb on - strand, within LU632_RS04895at 957.034 kb on - strand, within LU632_RS04895at 957.034 kb on - strand, within LU632_RS04895at 957.036 kb on - strand, within LU632_RS04895at 957.084 kb on + strand, within LU632_RS04895at 957.084 kb on + strand, within LU632_RS04895at 957.084 kb on + strand, within LU632_RS04895at 957.234 kb on + strand, within LU632_RS04900at 957.234 kb on + strand, within LU632_RS04900at 957.236 kb on + strand, within LU632_RS04900at 957.236 kb on + strand, within LU632_RS04900at 957.237 kb on - strand, within LU632_RS04900at 957.248 kb on + strand, within LU632_RS04900at 957.402 kb on + strand, within LU632_RS04900at 957.402 kb on + strand, within LU632_RS04900at 957.402 kb on + strand, within LU632_RS04900at 957.402 kb on + strand, within LU632_RS04900at 957.403 kb on - strand, within LU632_RS04900at 957.403 kb on - strand, within LU632_RS04900at 957.403 kb on - strand, within LU632_RS04900at 957.403 kb on - strand, within LU632_RS04900at 957.419 kb on - strand, within LU632_RS04900at 957.419 kb on - strand, within LU632_RS04900at 957.419 kb on - strand, within LU632_RS04900at 957.419 kb on - strand, within LU632_RS04900at 957.419 kb on - strand, within LU632_RS04900at 957.428 kb on + strand, within LU632_RS04900at 957.428 kb on + strand, within LU632_RS04900at 957.428 kb on + strand, within LU632_RS04900at 957.460 kb on - strand, within LU632_RS04900at 957.465 kb on - strand, within LU632_RS04900at 957.744 kb on + strandat 957.767 kb on + strandat 957.768 kb on - strandat 957.768 kb on - strandat 957.777 kb on - strandat 957.781 kb on + strandat 957.782 kb on - strandat 957.782 kb on - strandat 957.808 kb on - strand, within LU632_RS04905at 957.848 kb on + strand, within LU632_RS04905at 957.905 kb on + strand, within LU632_RS04905at 958.258 kb on + strandat 958.305 kb on - strandat 958.305 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Sucrose
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956,781 - LU632_RS04890 0.80 +1.9
956,797 + LU632_RS04890 0.83 +0.5
956,798 - LU632_RS04890 0.83 +0.4
956,798 - LU632_RS04890 0.83 +1.0
956,799 + LU632_RS04890 0.84 -1.0
956,799 + LU632_RS04890 0.84 +0.1
956,800 - LU632_RS04890 0.84 +0.6
956,839 - +0.2
956,936 - -0.5
956,939 - +0.1
957,033 + LU632_RS04895 0.40 +1.3
957,033 + LU632_RS04895 0.40 -0.4
957,034 - LU632_RS04895 0.40 +0.3
957,034 - LU632_RS04895 0.40 -0.2
957,034 - LU632_RS04895 0.40 +0.3
957,034 - LU632_RS04895 0.40 +0.7
957,036 - LU632_RS04895 0.41 -0.5
957,084 + LU632_RS04895 0.65 -0.1
957,084 + LU632_RS04895 0.65 +0.9
957,084 + LU632_RS04895 0.65 -0.5
957,234 + LU632_RS04900 0.11 +0.1
957,234 + LU632_RS04900 0.11 -0.2
957,236 + LU632_RS04900 0.12 +1.0
957,236 + LU632_RS04900 0.12 +0.5
957,237 - LU632_RS04900 0.12 -0.2
957,248 + LU632_RS04900 0.14 +0.2
957,402 + LU632_RS04900 0.40 -2.4
957,402 + LU632_RS04900 0.40 +0.9
957,402 + LU632_RS04900 0.40 -0.2
957,402 + LU632_RS04900 0.40 -1.7
957,403 - LU632_RS04900 0.40 -0.0
957,403 - LU632_RS04900 0.40 +0.8
957,403 - LU632_RS04900 0.40 -0.7
957,403 - LU632_RS04900 0.40 +0.1
957,419 - LU632_RS04900 0.43 -0.1
957,419 - LU632_RS04900 0.43 -0.4
957,419 - LU632_RS04900 0.43 -0.2
957,419 - LU632_RS04900 0.43 +0.6
957,419 - LU632_RS04900 0.43 +0.0
957,428 + LU632_RS04900 0.44 -1.0
957,428 + LU632_RS04900 0.44 -0.3
957,428 + LU632_RS04900 0.44 -0.1
957,460 - LU632_RS04900 0.49 +1.2
957,465 - LU632_RS04900 0.50 -0.9
957,744 + +0.2
957,767 + -0.4
957,768 - +0.9
957,768 - +0.6
957,777 - +0.3
957,781 + +0.1
957,782 - -0.4
957,782 - -0.2
957,808 - LU632_RS04905 0.16 +0.7
957,848 + LU632_RS04905 0.32 +0.9
957,905 + LU632_RS04905 0.57 -0.1
958,258 + -0.7
958,305 - -0.9
958,305 - -0.2

Or see this region's nucleotide sequence