Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04680 and LU632_RS04685 are separated by 34 nucleotides LU632_RS04685 and LU632_RS04690 are separated by 6 nucleotides LU632_RS04690 and LU632_RS04695 are separated by 161 nucleotides
LU632_RS04680: LU632_RS04680 - IS481 family transposase, at 916,781 to 917,689
_RS04680
LU632_RS04685: LU632_RS04685 - universal stress protein, at 917,724 to 918,089
_RS04685
LU632_RS04690: LU632_RS04690 - IclR family transcriptional regulator, at 918,096 to 918,878
_RS04690
LU632_RS04695: LU632_RS04695 - MFS transporter, at 919,040 to 920,632
_RS04695
Position (kb) 917
918
919 Strain fitness (log2 ratio) -1
0
1
2 at 917.744 kb on + strand at 917.811 kb on + strand, within LU632_RS04685 at 917.811 kb on + strand, within LU632_RS04685 at 917.938 kb on - strand, within LU632_RS04685 at 917.938 kb on - strand, within LU632_RS04685 at 917.985 kb on + strand, within LU632_RS04685 at 917.985 kb on + strand, within LU632_RS04685 at 917.985 kb on + strand, within LU632_RS04685 at 917.985 kb on + strand, within LU632_RS04685 at 917.986 kb on - strand, within LU632_RS04685 at 917.986 kb on - strand, within LU632_RS04685 at 917.992 kb on - strand, within LU632_RS04685 at 918.120 kb on + strand at 918.207 kb on + strand, within LU632_RS04690 at 918.231 kb on + strand, within LU632_RS04690 at 918.353 kb on + strand, within LU632_RS04690 at 918.354 kb on - strand, within LU632_RS04690 at 918.508 kb on + strand, within LU632_RS04690 at 918.508 kb on + strand, within LU632_RS04690 at 918.508 kb on + strand, within LU632_RS04690 at 918.508 kb on + strand, within LU632_RS04690 at 918.509 kb on - strand, within LU632_RS04690 at 918.509 kb on - strand, within LU632_RS04690 at 918.640 kb on - strand, within LU632_RS04690 at 918.889 kb on + strand at 918.890 kb on - strand at 918.890 kb on - strand at 918.911 kb on + strand at 918.931 kb on + strand at 918.932 kb on - strand at 918.932 kb on - strand at 918.975 kb on - strand at 918.975 kb on - strand at 918.977 kb on + strand at 919.039 kb on + strand at 919.054 kb on + strand at 919.073 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 917,744 + -0.2 917,811 + LU632_RS04685 0.24 +0.1 917,811 + LU632_RS04685 0.24 -1.0 917,938 - LU632_RS04685 0.58 -0.1 917,938 - LU632_RS04685 0.58 -0.8 917,985 + LU632_RS04685 0.71 +0.2 917,985 + LU632_RS04685 0.71 +0.2 917,985 + LU632_RS04685 0.71 -0.5 917,985 + LU632_RS04685 0.71 +0.5 917,986 - LU632_RS04685 0.72 -0.4 917,986 - LU632_RS04685 0.72 +0.4 917,992 - LU632_RS04685 0.73 +0.5 918,120 + -0.5 918,207 + LU632_RS04690 0.14 -0.4 918,231 + LU632_RS04690 0.17 +0.4 918,353 + LU632_RS04690 0.33 +0.5 918,354 - LU632_RS04690 0.33 -0.4 918,508 + LU632_RS04690 0.53 -0.3 918,508 + LU632_RS04690 0.53 -0.3 918,508 + LU632_RS04690 0.53 -1.2 918,508 + LU632_RS04690 0.53 +1.9 918,509 - LU632_RS04690 0.53 -1.1 918,509 - LU632_RS04690 0.53 -0.3 918,640 - LU632_RS04690 0.69 +0.1 918,889 + +0.0 918,890 - +0.9 918,890 - -0.2 918,911 + -0.7 918,931 + -0.1 918,932 - +0.3 918,932 - +0.6 918,975 - +1.2 918,975 - +0.4 918,977 + -0.9 919,039 + -1.1 919,054 + +1.3 919,073 - -0.2
Or see this region's nucleotide sequence