Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04390 and LU632_RS04395 are separated by 27 nucleotides LU632_RS04395 and LU632_RS04400 are separated by 27 nucleotides LU632_RS04400 and LU632_RS04405 are separated by 150 nucleotides LU632_RS04405 and LU632_RS04410 are separated by 44 nucleotides
LU632_RS04390: LU632_RS04390 - N-acetylmuramoyl-L-alanine amidase, at 867,611 to 868,225
_RS04390
LU632_RS04395: LU632_RS04395 - type VI secretion system tube protein Hcp, at 868,253 to 868,735
_RS04395
LU632_RS04400: LU632_RS04400 - recombinase family protein, at 868,763 to 869,344
_RS04400
LU632_RS04405: LU632_RS04405 - DUF4158 domain-containing protein, at 869,495 to 869,767
_RS04405
LU632_RS04410: LU632_RS04410 - Tn3 family transposase, at 869,812 to 872,322
_RS04410
Position (kb) 868
869
870 Strain fitness (log2 ratio) -1
0
1
2 at 868.139 kb on - strand, within LU632_RS04390 at 868.229 kb on + strand at 868.391 kb on - strand, within LU632_RS04395 at 868.391 kb on - strand, within LU632_RS04395 at 868.501 kb on + strand, within LU632_RS04395 at 868.554 kb on + strand, within LU632_RS04395 at 868.554 kb on + strand, within LU632_RS04395 at 868.555 kb on - strand, within LU632_RS04395 at 868.973 kb on - strand, within LU632_RS04400 at 868.973 kb on - strand, within LU632_RS04400 at 869.006 kb on + strand, within LU632_RS04400 at 869.007 kb on - strand, within LU632_RS04400 at 869.007 kb on - strand, within LU632_RS04400 at 869.046 kb on + strand, within LU632_RS04400 at 869.046 kb on + strand, within LU632_RS04400 at 869.159 kb on - strand, within LU632_RS04400 at 869.345 kb on - strand at 869.439 kb on + strand at 869.476 kb on + strand at 869.515 kb on + strand at 870.017 kb on - strand at 870.017 kb on - strand at 870.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 868,139 - LU632_RS04390 0.86 +0.2 868,229 + -0.3 868,391 - LU632_RS04395 0.29 +0.4 868,391 - LU632_RS04395 0.29 -0.5 868,501 + LU632_RS04395 0.51 -0.1 868,554 + LU632_RS04395 0.62 +0.5 868,554 + LU632_RS04395 0.62 +0.3 868,555 - LU632_RS04395 0.63 -0.6 868,973 - LU632_RS04400 0.36 +0.2 868,973 - LU632_RS04400 0.36 +2.0 869,006 + LU632_RS04400 0.42 -0.1 869,007 - LU632_RS04400 0.42 -0.5 869,007 - LU632_RS04400 0.42 -0.3 869,046 + LU632_RS04400 0.49 -0.1 869,046 + LU632_RS04400 0.49 +0.4 869,159 - LU632_RS04400 0.68 +0.9 869,345 - -0.9 869,439 + +0.6 869,476 + +0.2 869,515 + +0.2 870,017 - -0.9 870,017 - -0.6 870,059 - -0.2
Or see this region's nucleotide sequence