Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tagH and LU632_RS03845 overlap by 1 nucleotides LU632_RS03845 and LU632_RS03850 are separated by 18 nucleotides
LU632_RS03840: tagH - type VI secretion system-associated FHA domain protein TagH, at 764,709 to 766,553
tagH
LU632_RS03845: LU632_RS03845 - protein phosphatase 2C domain-containing protein, at 766,553 to 767,347
_RS03845
LU632_RS03850: LU632_RS03850 - hypothetical protein, at 767,366 to 768,418
_RS03850
Position (kb) 766
767
768 Strain fitness (log2 ratio) -2
-1
0
1
2 at 765.588 kb on + strand, within tagH at 765.589 kb on - strand, within tagH at 765.620 kb on + strand, within tagH at 765.620 kb on + strand, within tagH at 765.620 kb on + strand, within tagH at 765.621 kb on - strand, within tagH at 765.812 kb on + strand, within tagH at 765.813 kb on - strand, within tagH at 765.813 kb on - strand, within tagH at 765.813 kb on - strand, within tagH at 765.813 kb on - strand, within tagH at 765.813 kb on - strand, within tagH at 766.050 kb on - strand, within tagH at 766.050 kb on - strand, within tagH at 766.050 kb on - strand, within tagH at 766.238 kb on - strand, within tagH at 766.339 kb on + strand, within tagH at 766.500 kb on + strand at 766.558 kb on + strand at 766.559 kb on - strand at 766.601 kb on - strand at 766.871 kb on + strand, within LU632_RS03845 at 766.913 kb on + strand, within LU632_RS03845 at 766.932 kb on - strand, within LU632_RS03845 at 767.021 kb on + strand, within LU632_RS03845 at 767.147 kb on - strand, within LU632_RS03845 at 767.147 kb on - strand, within LU632_RS03845 at 767.147 kb on - strand, within LU632_RS03845 at 767.165 kb on - strand, within LU632_RS03845 at 767.171 kb on - strand, within LU632_RS03845 at 767.253 kb on - strand, within LU632_RS03845 at 767.365 kb on + strand at 767.365 kb on + strand at 767.372 kb on + strand at 767.372 kb on + strand at 767.401 kb on + strand at 767.402 kb on - strand at 767.612 kb on - strand, within LU632_RS03850 at 767.929 kb on + strand, within LU632_RS03850 at 767.979 kb on - strand, within LU632_RS03850 at 767.979 kb on - strand, within LU632_RS03850 at 768.046 kb on + strand, within LU632_RS03850 at 768.046 kb on + strand, within LU632_RS03850 at 768.047 kb on - strand, within LU632_RS03850 at 768.047 kb on - strand, within LU632_RS03850 at 768.246 kb on + strand, within LU632_RS03850 at 768.321 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 765,588 + tagH LU632_RS03840 0.48 +0.0 765,589 - tagH LU632_RS03840 0.48 +0.6 765,620 + tagH LU632_RS03840 0.49 -0.5 765,620 + tagH LU632_RS03840 0.49 -2.2 765,620 + tagH LU632_RS03840 0.49 -0.0 765,621 - tagH LU632_RS03840 0.49 +0.6 765,812 + tagH LU632_RS03840 0.60 +0.4 765,813 - tagH LU632_RS03840 0.60 +0.4 765,813 - tagH LU632_RS03840 0.60 -0.5 765,813 - tagH LU632_RS03840 0.60 -0.1 765,813 - tagH LU632_RS03840 0.60 -0.2 765,813 - tagH LU632_RS03840 0.60 +0.4 766,050 - tagH LU632_RS03840 0.73 +1.0 766,050 - tagH LU632_RS03840 0.73 -0.1 766,050 - tagH LU632_RS03840 0.73 +0.4 766,238 - tagH LU632_RS03840 0.83 -0.6 766,339 + tagH LU632_RS03840 0.88 +1.0 766,500 + -0.6 766,558 + -0.1 766,559 - +0.1 766,601 - -0.3 766,871 + LU632_RS03845 0.40 -0.6 766,913 + LU632_RS03845 0.45 +0.1 766,932 - LU632_RS03845 0.48 -0.4 767,021 + LU632_RS03845 0.59 -1.6 767,147 - LU632_RS03845 0.75 -0.2 767,147 - LU632_RS03845 0.75 +0.5 767,147 - LU632_RS03845 0.75 +0.2 767,165 - LU632_RS03845 0.77 -0.7 767,171 - LU632_RS03845 0.78 -0.2 767,253 - LU632_RS03845 0.88 -1.4 767,365 + +2.0 767,365 + +0.5 767,372 + -0.5 767,372 + -0.0 767,401 + +0.1 767,402 - +0.3 767,612 - LU632_RS03850 0.23 +1.5 767,929 + LU632_RS03850 0.53 +0.3 767,979 - LU632_RS03850 0.58 -0.1 767,979 - LU632_RS03850 0.58 +0.4 768,046 + LU632_RS03850 0.65 +0.7 768,046 + LU632_RS03850 0.65 -0.6 768,047 - LU632_RS03850 0.65 -0.3 768,047 - LU632_RS03850 0.65 -0.4 768,246 + LU632_RS03850 0.84 -0.0 768,321 - -0.3
Or see this region's nucleotide sequence