Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03580 and LU632_RS03585 overlap by 1 nucleotides LU632_RS03585 and LU632_RS03590 overlap by 10 nucleotides LU632_RS03590 and LU632_RS03595 overlap by 17 nucleotides LU632_RS03595 and lysB overlap by 4 nucleotides lysB and lysC overlap by 98 nucleotides lysC and LU632_RS03610 overlap by 38 nucleotides LU632_RS03610 and LU632_RS03615 overlap by 8 nucleotides
LU632_RS03580: LU632_RS03580 - head completion/stabilization protein, at 724,622 to 725,131
_RS03580
LU632_RS03585: LU632_RS03585 - tail protein X, at 725,131 to 725,334
_RS03585
LU632_RS03590: LU632_RS03590 - phage holin family protein, at 725,325 to 725,546
_RS03590
LU632_RS03595: LU632_RS03595 - lysozyme, at 725,530 to 726,039
_RS03595
LU632_RS03600: lysB - Rz-like lysis system protein LysB, at 726,036 to 726,449
lysB
LU632_RS03605: lysC - Rz1-like lysis system protein LysC, at 726,352 to 726,594
lysC
LU632_RS03610: LU632_RS03610 - phage tail protein, at 726,557 to 727,024
_RS03610
LU632_RS03615: LU632_RS03615 - phage virion morphogenesis protein, at 727,017 to 727,466
_RS03615
Position (kb) 726
727 Strain fitness (log2 ratio) -1
0
1 at 725.325 kb on - strand at 725.336 kb on + strand at 725.424 kb on + strand, within LU632_RS03590 at 725.425 kb on - strand, within LU632_RS03590 at 725.425 kb on - strand, within LU632_RS03590 at 725.905 kb on + strand, within LU632_RS03595 at 725.906 kb on - strand, within LU632_RS03595 at 725.906 kb on - strand, within LU632_RS03595 at 725.906 kb on - strand, within LU632_RS03595 at 725.959 kb on + strand, within LU632_RS03595 at 725.959 kb on + strand, within LU632_RS03595 at 726.043 kb on + strand at 726.043 kb on + strand at 726.044 kb on - strand at 726.110 kb on - strand, within lysB at 726.299 kb on - strand, within lysB at 726.302 kb on + strand, within lysB at 726.330 kb on + strand, within lysB at 726.699 kb on - strand, within LU632_RS03610 at 726.699 kb on - strand, within LU632_RS03610 at 726.699 kb on - strand, within LU632_RS03610 at 726.699 kb on - strand, within LU632_RS03610 at 726.793 kb on + strand, within LU632_RS03610 at 726.835 kb on + strand, within LU632_RS03610 at 726.836 kb on - strand, within LU632_RS03610 at 726.927 kb on - strand, within LU632_RS03610 at 726.927 kb on - strand, within LU632_RS03610 at 726.927 kb on - strand, within LU632_RS03610 at 726.935 kb on + strand, within LU632_RS03610 at 726.935 kb on + strand, within LU632_RS03610 at 726.936 kb on - strand, within LU632_RS03610 at 726.986 kb on + strand at 726.987 kb on - strand at 726.987 kb on - strand at 727.009 kb on + strand at 727.009 kb on + strand at 727.010 kb on - strand at 727.027 kb on + strand at 727.260 kb on - strand, within LU632_RS03615 at 727.400 kb on - strand, within LU632_RS03615
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 725,325 - -0.4 725,336 + -0.4 725,424 + LU632_RS03590 0.45 +0.2 725,425 - LU632_RS03590 0.45 -0.4 725,425 - LU632_RS03590 0.45 +0.9 725,905 + LU632_RS03595 0.74 -0.1 725,906 - LU632_RS03595 0.74 -0.6 725,906 - LU632_RS03595 0.74 -1.0 725,906 - LU632_RS03595 0.74 +0.1 725,959 + LU632_RS03595 0.84 -0.1 725,959 + LU632_RS03595 0.84 -0.0 726,043 + -0.0 726,043 + -0.7 726,044 - -0.4 726,110 - lysB LU632_RS03600 0.18 -0.3 726,299 - lysB LU632_RS03600 0.64 +0.2 726,302 + lysB LU632_RS03600 0.64 +0.4 726,330 + lysB LU632_RS03600 0.71 -1.6 726,699 - LU632_RS03610 0.30 +0.6 726,699 - LU632_RS03610 0.30 -0.6 726,699 - LU632_RS03610 0.30 -1.0 726,699 - LU632_RS03610 0.30 -0.8 726,793 + LU632_RS03610 0.50 +0.2 726,835 + LU632_RS03610 0.59 -0.6 726,836 - LU632_RS03610 0.60 -0.6 726,927 - LU632_RS03610 0.79 -1.3 726,927 - LU632_RS03610 0.79 +1.2 726,927 - LU632_RS03610 0.79 -0.3 726,935 + LU632_RS03610 0.81 -1.2 726,935 + LU632_RS03610 0.81 +0.0 726,936 - LU632_RS03610 0.81 -1.5 726,986 + +0.2 726,987 - +0.5 726,987 - +1.0 727,009 + -0.2 727,009 + -0.2 727,010 - -0.0 727,027 + +0.2 727,260 - LU632_RS03615 0.54 +0.6 727,400 - LU632_RS03615 0.85 -0.3
Or see this region's nucleotide sequence