Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03550

Experiment: HBM-Sucrose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03540 and LU632_RS03545 are separated by 265 nucleotidesLU632_RS03545 and LU632_RS03550 are separated by 20 nucleotidesLU632_RS03550 and LU632_RS03555 overlap by 4 nucleotidesLU632_RS03555 and LU632_RS03560 overlap by 1 nucleotides LU632_RS03540: LU632_RS03540 - hypothetical protein, at 716,859 to 717,590 _RS03540 LU632_RS03545: LU632_RS03545 - hypothetical protein, at 717,856 to 718,056 _RS03545 LU632_RS03550: LU632_RS03550 - phage portal protein, at 718,077 to 719,099 _RS03550 LU632_RS03555: LU632_RS03555 - terminase family protein, at 719,096 to 719,842 _RS03555 LU632_RS03560: LU632_RS03560 - terminase ATPase subunit family protein, at 719,842 to 721,611 _RS03560 Position (kb) 718 719 720Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 717.105 kb on - strand, within LU632_RS03540at 717.165 kb on + strand, within LU632_RS03540at 717.166 kb on - strand, within LU632_RS03540at 717.211 kb on - strand, within LU632_RS03540at 717.219 kb on - strand, within LU632_RS03540at 717.219 kb on - strand, within LU632_RS03540at 717.228 kb on + strand, within LU632_RS03540at 717.248 kb on + strand, within LU632_RS03540at 717.318 kb on - strand, within LU632_RS03540at 717.336 kb on - strand, within LU632_RS03540at 717.341 kb on + strand, within LU632_RS03540at 717.342 kb on - strand, within LU632_RS03540at 717.423 kb on + strand, within LU632_RS03540at 717.423 kb on + strand, within LU632_RS03540at 717.425 kb on + strand, within LU632_RS03540at 717.426 kb on - strand, within LU632_RS03540at 717.426 kb on - strand, within LU632_RS03540at 717.426 kb on - strand, within LU632_RS03540at 717.452 kb on + strand, within LU632_RS03540at 717.588 kb on + strandat 717.588 kb on + strandat 717.589 kb on - strandat 717.705 kb on - strandat 717.716 kb on + strandat 717.716 kb on + strandat 717.717 kb on - strandat 717.858 kb on - strandat 717.871 kb on - strandat 717.920 kb on + strand, within LU632_RS03545at 717.963 kb on - strand, within LU632_RS03545at 718.079 kb on - strandat 718.099 kb on + strandat 718.227 kb on - strand, within LU632_RS03550at 718.239 kb on - strand, within LU632_RS03550at 718.247 kb on + strand, within LU632_RS03550at 718.302 kb on + strand, within LU632_RS03550at 718.302 kb on + strand, within LU632_RS03550at 718.421 kb on + strand, within LU632_RS03550at 718.480 kb on + strand, within LU632_RS03550at 718.480 kb on + strand, within LU632_RS03550at 718.480 kb on + strand, within LU632_RS03550at 718.480 kb on + strand, within LU632_RS03550at 718.481 kb on - strand, within LU632_RS03550at 718.481 kb on - strand, within LU632_RS03550at 718.481 kb on - strand, within LU632_RS03550at 718.514 kb on - strand, within LU632_RS03550at 718.516 kb on + strand, within LU632_RS03550at 718.562 kb on + strand, within LU632_RS03550at 718.577 kb on - strand, within LU632_RS03550at 718.591 kb on + strand, within LU632_RS03550at 718.592 kb on - strand, within LU632_RS03550at 718.604 kb on + strand, within LU632_RS03550at 718.605 kb on - strand, within LU632_RS03550at 718.605 kb on - strand, within LU632_RS03550at 718.605 kb on - strand, within LU632_RS03550at 718.711 kb on + strand, within LU632_RS03550at 718.712 kb on - strand, within LU632_RS03550at 718.712 kb on - strand, within LU632_RS03550at 718.740 kb on + strand, within LU632_RS03550at 718.789 kb on - strand, within LU632_RS03550at 718.849 kb on + strand, within LU632_RS03550at 718.850 kb on - strand, within LU632_RS03550at 718.850 kb on - strand, within LU632_RS03550at 718.899 kb on + strand, within LU632_RS03550at 718.899 kb on + strand, within LU632_RS03550at 719.270 kb on + strand, within LU632_RS03555at 719.347 kb on - strand, within LU632_RS03555at 719.347 kb on - strand, within LU632_RS03555at 719.347 kb on - strand, within LU632_RS03555at 719.351 kb on - strand, within LU632_RS03555at 719.351 kb on - strand, within LU632_RS03555at 719.461 kb on - strand, within LU632_RS03555at 719.592 kb on + strand, within LU632_RS03555at 719.593 kb on - strand, within LU632_RS03555at 719.860 kb on - strandat 719.969 kb on + strandat 719.969 kb on + strandat 719.970 kb on - strandat 719.970 kb on - strandat 720.051 kb on - strand, within LU632_RS03560

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Sucrose
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717,105 - LU632_RS03540 0.34 +0.2
717,165 + LU632_RS03540 0.42 -0.1
717,166 - LU632_RS03540 0.42 -0.5
717,211 - LU632_RS03540 0.48 +0.0
717,219 - LU632_RS03540 0.49 -0.3
717,219 - LU632_RS03540 0.49 +0.5
717,228 + LU632_RS03540 0.50 -0.2
717,248 + LU632_RS03540 0.53 -0.7
717,318 - LU632_RS03540 0.63 +1.0
717,336 - LU632_RS03540 0.65 +0.1
717,341 + LU632_RS03540 0.66 -0.7
717,342 - LU632_RS03540 0.66 -1.2
717,423 + LU632_RS03540 0.77 +1.1
717,423 + LU632_RS03540 0.77 -0.4
717,425 + LU632_RS03540 0.77 -0.8
717,426 - LU632_RS03540 0.77 -1.6
717,426 - LU632_RS03540 0.77 -0.0
717,426 - LU632_RS03540 0.77 -0.2
717,452 + LU632_RS03540 0.81 -0.1
717,588 + -0.1
717,588 + +0.6
717,589 - -0.1
717,705 - +0.1
717,716 + -0.4
717,716 + -3.8
717,717 - +0.2
717,858 - -0.0
717,871 - +0.2
717,920 + LU632_RS03545 0.32 -0.1
717,963 - LU632_RS03545 0.53 -0.0
718,079 - +0.5
718,099 + +1.0
718,227 - LU632_RS03550 0.15 -0.5
718,239 - LU632_RS03550 0.16 -0.2
718,247 + LU632_RS03550 0.17 +0.1
718,302 + LU632_RS03550 0.22 -0.9
718,302 + LU632_RS03550 0.22 -0.1
718,421 + LU632_RS03550 0.34 +0.2
718,480 + LU632_RS03550 0.39 -0.6
718,480 + LU632_RS03550 0.39 +0.4
718,480 + LU632_RS03550 0.39 +1.4
718,480 + LU632_RS03550 0.39 -0.6
718,481 - LU632_RS03550 0.39 -0.6
718,481 - LU632_RS03550 0.39 -0.2
718,481 - LU632_RS03550 0.39 -0.6
718,514 - LU632_RS03550 0.43 -0.1
718,516 + LU632_RS03550 0.43 -0.3
718,562 + LU632_RS03550 0.47 +1.0
718,577 - LU632_RS03550 0.49 +0.5
718,591 + LU632_RS03550 0.50 +1.4
718,592 - LU632_RS03550 0.50 -0.0
718,604 + LU632_RS03550 0.52 -0.1
718,605 - LU632_RS03550 0.52 -0.2
718,605 - LU632_RS03550 0.52 +0.3
718,605 - LU632_RS03550 0.52 +0.3
718,711 + LU632_RS03550 0.62 -0.2
718,712 - LU632_RS03550 0.62 -0.6
718,712 - LU632_RS03550 0.62 -0.2
718,740 + LU632_RS03550 0.65 +0.0
718,789 - LU632_RS03550 0.70 -1.3
718,849 + LU632_RS03550 0.75 -0.4
718,850 - LU632_RS03550 0.76 +0.7
718,850 - LU632_RS03550 0.76 +0.1
718,899 + LU632_RS03550 0.80 +0.6
718,899 + LU632_RS03550 0.80 -0.2
719,270 + LU632_RS03555 0.23 -0.1
719,347 - LU632_RS03555 0.34 -0.7
719,347 - LU632_RS03555 0.34 -0.3
719,347 - LU632_RS03555 0.34 +1.2
719,351 - LU632_RS03555 0.34 -0.0
719,351 - LU632_RS03555 0.34 -0.2
719,461 - LU632_RS03555 0.49 -0.0
719,592 + LU632_RS03555 0.66 -0.2
719,593 - LU632_RS03555 0.67 -0.2
719,860 - -0.5
719,969 + +1.0
719,969 + -0.4
719,970 - -0.7
719,970 - -0.2
720,051 - LU632_RS03560 0.12 +0.1

Or see this region's nucleotide sequence