Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01825 and LU632_RS01830 overlap by 7 nucleotides LU632_RS01830 and LU632_RS01835 are separated by 171 nucleotides LU632_RS01835 and LU632_RS01840 are separated by 178 nucleotides
LU632_RS01825: LU632_RS01825 - IS5 family transposase, at 351,201 to 351,986
_RS01825
LU632_RS01830: LU632_RS01830 - IS1 family transposase, at 351,980 to 352,677
_RS01830
LU632_RS01835: LU632_RS01835 - transposase, at 352,849 to 353,495
_RS01835
LU632_RS01840: LU632_RS01840 - protein-disulfide reductase DsbD, at 353,674 to 355,362
_RS01840
Position (kb) 352
353
354 Strain fitness (log2 ratio) -2
-1
0
1
2 at 352.702 kb on + strand at 352.747 kb on + strand at 352.748 kb on - strand at 352.775 kb on + strand at 352.775 kb on + strand at 352.775 kb on + strand at 352.776 kb on - strand at 352.778 kb on - strand at 352.778 kb on - strand at 352.788 kb on + strand at 353.585 kb on - strand at 353.593 kb on + strand at 353.593 kb on + strand at 353.601 kb on + strand at 353.601 kb on + strand at 353.602 kb on - strand at 353.602 kb on - strand at 353.602 kb on - strand at 353.602 kb on - strand at 353.602 kb on - strand at 353.602 kb on - strand at 353.605 kb on + strand at 353.676 kb on - strand at 353.794 kb on + strand at 353.795 kb on - strand at 353.795 kb on - strand at 353.832 kb on + strand at 353.904 kb on + strand, within LU632_RS01840 at 353.905 kb on - strand, within LU632_RS01840 at 353.905 kb on - strand, within LU632_RS01840 at 353.907 kb on - strand, within LU632_RS01840 at 354.048 kb on + strand, within LU632_RS01840 at 354.349 kb on + strand, within LU632_RS01840 at 354.374 kb on + strand, within LU632_RS01840 at 354.374 kb on + strand, within LU632_RS01840 at 354.374 kb on + strand, within LU632_RS01840 at 354.374 kb on + strand, within LU632_RS01840 at 354.374 kb on + strand, within LU632_RS01840 at 354.374 kb on + strand, within LU632_RS01840 at 354.374 kb on + strand, within LU632_RS01840 at 354.375 kb on - strand, within LU632_RS01840 at 354.375 kb on - strand, within LU632_RS01840 at 354.380 kb on + strand, within LU632_RS01840 at 354.381 kb on - strand, within LU632_RS01840 at 354.381 kb on - strand, within LU632_RS01840 at 354.381 kb on - strand, within LU632_RS01840 at 354.425 kb on + strand, within LU632_RS01840 at 354.425 kb on + strand, within LU632_RS01840 at 354.426 kb on - strand, within LU632_RS01840 at 354.426 kb on - strand, within LU632_RS01840 at 354.426 kb on - strand, within LU632_RS01840
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 352,702 + -0.4 352,747 + -0.5 352,748 - +1.1 352,775 + -1.3 352,775 + -0.2 352,775 + -0.7 352,776 - -1.4 352,778 - +0.7 352,778 - +0.2 352,788 + -0.5 353,585 - -0.5 353,593 + -0.6 353,593 + -0.1 353,601 + +0.3 353,601 + +0.2 353,602 - -0.4 353,602 - -0.2 353,602 - +0.2 353,602 - -0.2 353,602 - -0.5 353,602 - +1.8 353,605 + +0.3 353,676 - -0.9 353,794 + +0.1 353,795 - -0.1 353,795 - +0.2 353,832 + -0.3 353,904 + LU632_RS01840 0.14 +0.0 353,905 - LU632_RS01840 0.14 -0.9 353,905 - LU632_RS01840 0.14 +0.7 353,907 - LU632_RS01840 0.14 -0.2 354,048 + LU632_RS01840 0.22 +0.8 354,349 + LU632_RS01840 0.40 -1.7 354,374 + LU632_RS01840 0.41 -0.3 354,374 + LU632_RS01840 0.41 +0.2 354,374 + LU632_RS01840 0.41 -0.1 354,374 + LU632_RS01840 0.41 -0.6 354,374 + LU632_RS01840 0.41 -1.9 354,374 + LU632_RS01840 0.41 -0.4 354,374 + LU632_RS01840 0.41 -0.9 354,375 - LU632_RS01840 0.42 -0.3 354,375 - LU632_RS01840 0.42 -0.5 354,380 + LU632_RS01840 0.42 -0.1 354,381 - LU632_RS01840 0.42 +0.9 354,381 - LU632_RS01840 0.42 -0.2 354,381 - LU632_RS01840 0.42 +0.4 354,425 + LU632_RS01840 0.44 -0.9 354,425 + LU632_RS01840 0.44 -0.7 354,426 - LU632_RS01840 0.45 +1.3 354,426 - LU632_RS01840 0.45 -1.1 354,426 - LU632_RS01840 0.45 -0.6
Or see this region's nucleotide sequence