Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00775 and kdpF are separated by 447 nucleotides kdpF and kdpA overlap by 1 nucleotides kdpA and kdpB are separated by 18 nucleotides
LU632_RS00775: LU632_RS00775 - IS481 family transposase, at 165,992 to 167,032
_RS00775
LU632_RS00780: kdpF - K(+)-transporting ATPase subunit F, at 167,480 to 167,569
kdpF
LU632_RS00785: kdpA - potassium-transporting ATPase subunit KdpA, at 167,569 to 169,254
kdpA
LU632_RS00790: kdpB - potassium-transporting ATPase subunit KdpB, at 169,273 to 171,321
kdpB
Position (kb) 167
168
169
170 Strain fitness (log2 ratio) -2
-1
0
1
2 at 167.152 kb on + strand at 167.153 kb on - strand at 167.236 kb on - strand at 167.360 kb on - strand at 167.370 kb on - strand at 167.370 kb on - strand at 167.370 kb on - strand at 167.370 kb on - strand at 167.447 kb on + strand at 167.447 kb on + strand at 167.447 kb on + strand at 167.447 kb on + strand at 167.447 kb on + strand at 167.447 kb on + strand at 167.447 kb on + strand at 167.493 kb on + strand, within kdpF at 167.493 kb on + strand, within kdpF at 167.538 kb on + strand, within kdpF at 167.538 kb on + strand, within kdpF at 167.538 kb on + strand, within kdpF at 167.539 kb on - strand, within kdpF at 167.539 kb on - strand, within kdpF at 167.539 kb on - strand, within kdpF at 167.540 kb on + strand, within kdpF at 167.602 kb on + strand at 167.602 kb on + strand at 167.605 kb on - strand at 167.684 kb on + strand at 167.685 kb on - strand at 167.799 kb on + strand, within kdpA at 168.276 kb on + strand, within kdpA at 168.484 kb on - strand, within kdpA at 168.484 kb on - strand, within kdpA at 168.683 kb on + strand, within kdpA at 168.683 kb on + strand, within kdpA at 168.684 kb on - strand, within kdpA at 168.741 kb on - strand, within kdpA at 168.778 kb on + strand, within kdpA at 168.779 kb on - strand, within kdpA at 168.999 kb on + strand, within kdpA at 169.053 kb on + strand, within kdpA at 169.162 kb on - strand at 169.162 kb on - strand at 169.198 kb on - strand at 169.282 kb on - strand at 169.495 kb on - strand, within kdpB at 169.586 kb on - strand, within kdpB at 169.612 kb on + strand, within kdpB at 169.612 kb on + strand, within kdpB at 169.613 kb on - strand, within kdpB at 169.613 kb on - strand, within kdpB at 169.617 kb on + strand, within kdpB at 169.617 kb on + strand, within kdpB at 169.617 kb on + strand, within kdpB at 169.664 kb on + strand, within kdpB at 169.664 kb on + strand, within kdpB at 169.664 kb on + strand, within kdpB at 169.664 kb on + strand, within kdpB at 169.664 kb on + strand, within kdpB at 169.665 kb on - strand, within kdpB at 169.665 kb on - strand, within kdpB at 169.665 kb on - strand, within kdpB at 169.689 kb on + strand, within kdpB at 169.690 kb on - strand, within kdpB at 169.801 kb on - strand, within kdpB at 169.929 kb on - strand, within kdpB at 170.048 kb on + strand, within kdpB at 170.049 kb on - strand, within kdpB at 170.051 kb on + strand, within kdpB at 170.051 kb on + strand, within kdpB at 170.051 kb on + strand, within kdpB at 170.052 kb on - strand, within kdpB at 170.052 kb on - strand, within kdpB
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 167,152 + -0.0 167,153 - +0.1 167,236 - +0.8 167,360 - -0.7 167,370 - -0.4 167,370 - +1.1 167,370 - +0.3 167,370 - -0.8 167,447 + -0.6 167,447 + +0.8 167,447 + +0.2 167,447 + +0.5 167,447 + -0.3 167,447 + -1.1 167,447 + +2.1 167,493 + kdpF LU632_RS00780 0.14 +0.6 167,493 + kdpF LU632_RS00780 0.14 -0.7 167,538 + kdpF LU632_RS00780 0.64 +0.2 167,538 + kdpF LU632_RS00780 0.64 -0.2 167,538 + kdpF LU632_RS00780 0.64 +0.3 167,539 - kdpF LU632_RS00780 0.66 +0.6 167,539 - kdpF LU632_RS00780 0.66 -0.5 167,539 - kdpF LU632_RS00780 0.66 -0.0 167,540 + kdpF LU632_RS00780 0.67 +0.1 167,602 + -0.0 167,602 + -0.1 167,605 - -0.5 167,684 + -0.2 167,685 - +0.1 167,799 + kdpA LU632_RS00785 0.14 +0.2 168,276 + kdpA LU632_RS00785 0.42 +1.2 168,484 - kdpA LU632_RS00785 0.54 -1.0 168,484 - kdpA LU632_RS00785 0.54 +0.2 168,683 + kdpA LU632_RS00785 0.66 +1.6 168,683 + kdpA LU632_RS00785 0.66 +0.7 168,684 - kdpA LU632_RS00785 0.66 -0.2 168,741 - kdpA LU632_RS00785 0.70 -1.7 168,778 + kdpA LU632_RS00785 0.72 -0.0 168,779 - kdpA LU632_RS00785 0.72 -0.1 168,999 + kdpA LU632_RS00785 0.85 +0.0 169,053 + kdpA LU632_RS00785 0.88 +0.5 169,162 - -0.0 169,162 - -1.1 169,198 - -0.3 169,282 - -0.4 169,495 - kdpB LU632_RS00790 0.11 -0.2 169,586 - kdpB LU632_RS00790 0.15 -0.3 169,612 + kdpB LU632_RS00790 0.17 -1.3 169,612 + kdpB LU632_RS00790 0.17 +0.8 169,613 - kdpB LU632_RS00790 0.17 +0.4 169,613 - kdpB LU632_RS00790 0.17 -0.1 169,617 + kdpB LU632_RS00790 0.17 +1.5 169,617 + kdpB LU632_RS00790 0.17 +0.8 169,617 + kdpB LU632_RS00790 0.17 -0.1 169,664 + kdpB LU632_RS00790 0.19 +0.2 169,664 + kdpB LU632_RS00790 0.19 +0.0 169,664 + kdpB LU632_RS00790 0.19 -1.3 169,664 + kdpB LU632_RS00790 0.19 +1.0 169,664 + kdpB LU632_RS00790 0.19 -0.2 169,665 - kdpB LU632_RS00790 0.19 -0.1 169,665 - kdpB LU632_RS00790 0.19 +0.4 169,665 - kdpB LU632_RS00790 0.19 +0.1 169,689 + kdpB LU632_RS00790 0.20 -0.8 169,690 - kdpB LU632_RS00790 0.20 +1.1 169,801 - kdpB LU632_RS00790 0.26 +0.4 169,929 - kdpB LU632_RS00790 0.32 -0.8 170,048 + kdpB LU632_RS00790 0.38 -0.5 170,049 - kdpB LU632_RS00790 0.38 +0.0 170,051 + kdpB LU632_RS00790 0.38 +0.0 170,051 + kdpB LU632_RS00790 0.38 +0.4 170,051 + kdpB LU632_RS00790 0.38 +0.5 170,052 - kdpB LU632_RS00790 0.38 +0.1 170,052 - kdpB LU632_RS00790 0.38 -1.9
Or see this region's nucleotide sequence